Strain Fitness in Serratia liquefaciens MT49 around IAI46_18325

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18320 and IAI46_18325 are separated by 8 nucleotidesIAI46_18325 and IAI46_18330 are separated by 198 nucleotides IAI46_18320: IAI46_18320 - (2,3-dihydroxybenzoyl)adenylate synthase, at 3,851,778 to 3,853,406 _18320 IAI46_18325: IAI46_18325 - isochorismate synthase, at 3,853,415 to 3,854,623 _18325 IAI46_18330: IAI46_18330 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 3,854,822 to 3,855,781 _18330 Position (kb) 3853 3854 3855Strain fitness (log2 ratio) -1 0 1 2 3at 3852.600 kb on + strand, within IAI46_18320at 3852.662 kb on - strand, within IAI46_18320at 3852.778 kb on + strand, within IAI46_18320at 3852.778 kb on + strand, within IAI46_18320at 3852.779 kb on - strand, within IAI46_18320at 3852.781 kb on + strand, within IAI46_18320at 3852.781 kb on + strand, within IAI46_18320at 3852.781 kb on + strand, within IAI46_18320at 3852.782 kb on - strand, within IAI46_18320at 3852.782 kb on - strand, within IAI46_18320at 3852.785 kb on - strand, within IAI46_18320at 3852.785 kb on - strand, within IAI46_18320at 3852.995 kb on - strand, within IAI46_18320at 3853.063 kb on + strand, within IAI46_18320at 3853.092 kb on - strand, within IAI46_18320at 3853.113 kb on + strand, within IAI46_18320at 3853.114 kb on - strand, within IAI46_18320at 3853.147 kb on + strand, within IAI46_18320at 3853.147 kb on + strand, within IAI46_18320at 3853.147 kb on + strand, within IAI46_18320at 3853.197 kb on + strand, within IAI46_18320at 3853.198 kb on - strand, within IAI46_18320at 3853.198 kb on - strand, within IAI46_18320at 3853.198 kb on - strand, within IAI46_18320at 3853.244 kb on + strandat 3853.245 kb on - strandat 3853.245 kb on - strandat 3853.256 kb on - strandat 3853.417 kb on - strandat 3853.450 kb on + strandat 3853.451 kb on - strandat 3853.568 kb on + strand, within IAI46_18325at 3853.765 kb on + strand, within IAI46_18325at 3853.855 kb on + strand, within IAI46_18325at 3853.855 kb on + strand, within IAI46_18325at 3853.882 kb on - strand, within IAI46_18325at 3853.882 kb on - strand, within IAI46_18325at 3854.003 kb on + strand, within IAI46_18325at 3854.086 kb on + strand, within IAI46_18325at 3854.086 kb on + strand, within IAI46_18325at 3854.245 kb on + strand, within IAI46_18325at 3854.524 kb on + strandat 3854.610 kb on - strandat 3854.715 kb on - strandat 3854.715 kb on - strandat 3854.780 kb on - strandat 3854.825 kb on + strandat 3854.865 kb on + strandat 3855.109 kb on - strand, within IAI46_18330at 3855.119 kb on + strand, within IAI46_18330at 3855.213 kb on - strand, within IAI46_18330at 3855.285 kb on + strand, within IAI46_18330at 3855.286 kb on - strand, within IAI46_18330at 3855.373 kb on + strand, within IAI46_18330at 3855.373 kb on + strand, within IAI46_18330

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,852,600 + IAI46_18320 0.50 +0.8
3,852,662 - IAI46_18320 0.54 +0.4
3,852,778 + IAI46_18320 0.61 -1.7
3,852,778 + IAI46_18320 0.61 +3.0
3,852,779 - IAI46_18320 0.61 -0.0
3,852,781 + IAI46_18320 0.62 -1.2
3,852,781 + IAI46_18320 0.62 -0.3
3,852,781 + IAI46_18320 0.62 +0.8
3,852,782 - IAI46_18320 0.62 +0.0
3,852,782 - IAI46_18320 0.62 -0.1
3,852,785 - IAI46_18320 0.62 +0.3
3,852,785 - IAI46_18320 0.62 +0.7
3,852,995 - IAI46_18320 0.75 -0.2
3,853,063 + IAI46_18320 0.79 +0.3
3,853,092 - IAI46_18320 0.81 +0.5
3,853,113 + IAI46_18320 0.82 +0.1
3,853,114 - IAI46_18320 0.82 -0.0
3,853,147 + IAI46_18320 0.84 +1.5
3,853,147 + IAI46_18320 0.84 +0.2
3,853,147 + IAI46_18320 0.84 -0.3
3,853,197 + IAI46_18320 0.87 -0.2
3,853,198 - IAI46_18320 0.87 +1.5
3,853,198 - IAI46_18320 0.87 -1.1
3,853,198 - IAI46_18320 0.87 +0.5
3,853,244 + +1.2
3,853,245 - -0.1
3,853,245 - +0.1
3,853,256 - +1.0
3,853,417 - -0.4
3,853,450 + -0.2
3,853,451 - +0.1
3,853,568 + IAI46_18325 0.13 +1.2
3,853,765 + IAI46_18325 0.29 -0.1
3,853,855 + IAI46_18325 0.36 +0.1
3,853,855 + IAI46_18325 0.36 +1.1
3,853,882 - IAI46_18325 0.39 +0.3
3,853,882 - IAI46_18325 0.39 +2.0
3,854,003 + IAI46_18325 0.49 -1.5
3,854,086 + IAI46_18325 0.56 +0.3
3,854,086 + IAI46_18325 0.56 -0.2
3,854,245 + IAI46_18325 0.69 -0.0
3,854,524 + -0.8
3,854,610 - +0.2
3,854,715 - +0.1
3,854,715 - -0.1
3,854,780 - -0.0
3,854,825 + -0.8
3,854,865 + +0.6
3,855,109 - IAI46_18330 0.30 +0.1
3,855,119 + IAI46_18330 0.31 -0.8
3,855,213 - IAI46_18330 0.41 +0.1
3,855,285 + IAI46_18330 0.48 +0.5
3,855,286 - IAI46_18330 0.48 -1.3
3,855,373 + IAI46_18330 0.57 +1.2
3,855,373 + IAI46_18330 0.57 +0.5

Or see this region's nucleotide sequence