Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_17845 and IAI46_17850 are separated by 89 nucleotides IAI46_17850 and IAI46_17855 are separated by 177 nucleotides
IAI46_17845: IAI46_17845 - aspartate-semialdehyde dehydrogenase, at 3,760,175 to 3,761,185
_17845
IAI46_17850: IAI46_17850 - 4-phosphoerythronate dehydrogenase PdxB, at 3,761,275 to 3,762,396
_17850
IAI46_17855: IAI46_17855 - helix-turn-helix transcriptional regulator, at 3,762,574 to 3,763,347
_17855
Position (kb)
3761
3762
3763 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3760.386 kb on - strand, within IAI46_17845 at 3760.464 kb on + strand, within IAI46_17845 at 3760.525 kb on + strand, within IAI46_17845 at 3760.814 kb on - strand, within IAI46_17845 at 3760.819 kb on + strand, within IAI46_17845 at 3760.922 kb on - strand, within IAI46_17845 at 3761.082 kb on + strand, within IAI46_17845 at 3761.082 kb on + strand, within IAI46_17845 at 3761.317 kb on - strand at 3761.370 kb on - strand at 3761.370 kb on - strand at 3761.447 kb on + strand, within IAI46_17850 at 3761.447 kb on + strand, within IAI46_17850 at 3761.471 kb on - strand, within IAI46_17850 at 3761.622 kb on + strand, within IAI46_17850 at 3761.622 kb on + strand, within IAI46_17850 at 3761.623 kb on - strand, within IAI46_17850 at 3761.623 kb on - strand, within IAI46_17850 at 3761.623 kb on - strand, within IAI46_17850 at 3761.875 kb on - strand, within IAI46_17850 at 3761.968 kb on + strand, within IAI46_17850 at 3761.969 kb on - strand, within IAI46_17850 at 3761.969 kb on - strand, within IAI46_17850 at 3761.974 kb on - strand, within IAI46_17850 at 3762.104 kb on + strand, within IAI46_17850 at 3762.104 kb on + strand, within IAI46_17850 at 3762.105 kb on - strand, within IAI46_17850 at 3762.105 kb on - strand, within IAI46_17850 at 3762.105 kb on - strand, within IAI46_17850 at 3762.105 kb on - strand, within IAI46_17850 at 3762.181 kb on + strand, within IAI46_17850 at 3762.373 kb on - strand at 3762.424 kb on + strand at 3762.424 kb on + strand at 3762.425 kb on - strand at 3762.483 kb on - strand at 3762.539 kb on - strand at 3762.539 kb on - strand at 3762.548 kb on + strand at 3762.549 kb on - strand at 3762.559 kb on + strand at 3762.630 kb on + strand at 3762.648 kb on + strand at 3762.648 kb on + strand at 3762.648 kb on + strand at 3762.648 kb on + strand at 3762.648 kb on + strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.649 kb on - strand at 3762.650 kb on + strand at 3762.685 kb on - strand, within IAI46_17855 at 3762.798 kb on - strand, within IAI46_17855 at 3762.829 kb on - strand, within IAI46_17855 at 3762.829 kb on - strand, within IAI46_17855 at 3763.118 kb on + strand, within IAI46_17855 at 3763.118 kb on + strand, within IAI46_17855 at 3763.119 kb on - strand, within IAI46_17855 at 3763.119 kb on - strand, within IAI46_17855 at 3763.216 kb on + strand, within IAI46_17855 at 3763.240 kb on - strand, within IAI46_17855
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 3,760,386 - IAI46_17845 0.21 +1.3 3,760,464 + IAI46_17845 0.29 -0.3 3,760,525 + IAI46_17845 0.35 +0.3 3,760,814 - IAI46_17845 0.63 +0.3 3,760,819 + IAI46_17845 0.64 +0.2 3,760,922 - IAI46_17845 0.74 +0.1 3,761,082 + IAI46_17845 0.90 +1.9 3,761,082 + IAI46_17845 0.90 -1.7 3,761,317 - +0.1 3,761,370 - +0.4 3,761,370 - -0.1 3,761,447 + IAI46_17850 0.15 +0.8 3,761,447 + IAI46_17850 0.15 -0.6 3,761,471 - IAI46_17850 0.17 +1.3 3,761,622 + IAI46_17850 0.31 -0.3 3,761,622 + IAI46_17850 0.31 -2.3 3,761,623 - IAI46_17850 0.31 +0.4 3,761,623 - IAI46_17850 0.31 -0.3 3,761,623 - IAI46_17850 0.31 -1.3 3,761,875 - IAI46_17850 0.53 -0.7 3,761,968 + IAI46_17850 0.62 -0.4 3,761,969 - IAI46_17850 0.62 -0.2 3,761,969 - IAI46_17850 0.62 +0.5 3,761,974 - IAI46_17850 0.62 +0.1 3,762,104 + IAI46_17850 0.74 +0.7 3,762,104 + IAI46_17850 0.74 -1.3 3,762,105 - IAI46_17850 0.74 +1.5 3,762,105 - IAI46_17850 0.74 -1.1 3,762,105 - IAI46_17850 0.74 +1.7 3,762,105 - IAI46_17850 0.74 +0.1 3,762,181 + IAI46_17850 0.81 -0.4 3,762,373 - +0.8 3,762,424 + +0.6 3,762,424 + +2.0 3,762,425 - -0.1 3,762,483 - -0.5 3,762,539 - -1.3 3,762,539 - -1.7 3,762,548 + -1.3 3,762,549 - -0.1 3,762,559 + -0.4 3,762,630 + -0.7 3,762,648 + +0.9 3,762,648 + -1.2 3,762,648 + -0.5 3,762,648 + -0.8 3,762,648 + +0.3 3,762,649 - +1.7 3,762,649 - +1.3 3,762,649 - -0.2 3,762,649 - -0.8 3,762,649 - -0.9 3,762,649 - +0.1 3,762,649 - -0.5 3,762,649 - -0.4 3,762,650 + -0.4 3,762,685 - IAI46_17855 0.14 +0.3 3,762,798 - IAI46_17855 0.29 +1.3 3,762,829 - IAI46_17855 0.33 +1.9 3,762,829 - IAI46_17855 0.33 +0.1 3,763,118 + IAI46_17855 0.70 -0.8 3,763,118 + IAI46_17855 0.70 +1.7 3,763,119 - IAI46_17855 0.70 +0.7 3,763,119 - IAI46_17855 0.70 +0.3 3,763,216 + IAI46_17855 0.83 +0.8 3,763,240 - IAI46_17855 0.86 -0.6
Or see this region's nucleotide sequence