Strain Fitness in Serratia liquefaciens MT49 around IAI46_17725

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17720 and IAI46_17725 are separated by 117 nucleotidesIAI46_17725 and IAI46_17730 are separated by 26 nucleotides IAI46_17720: IAI46_17720 - pyridoxal phosphate-dependent aminotransferase, at 3,735,840 to 3,737,054 _17720 IAI46_17725: IAI46_17725 - 5'-deoxynucleotidase, at 3,737,172 to 3,737,771 _17725 IAI46_17730: IAI46_17730 - SLC13 family permease, at 3,737,798 to 3,739,648 _17730 Position (kb) 3737 3738Strain fitness (log2 ratio) -2 -1 0 1 2at 3736.275 kb on + strand, within IAI46_17720at 3736.275 kb on + strand, within IAI46_17720at 3736.393 kb on - strand, within IAI46_17720at 3736.467 kb on + strand, within IAI46_17720at 3736.538 kb on + strand, within IAI46_17720at 3736.564 kb on - strand, within IAI46_17720at 3736.629 kb on + strand, within IAI46_17720at 3736.758 kb on + strand, within IAI46_17720at 3736.758 kb on + strand, within IAI46_17720at 3736.758 kb on + strand, within IAI46_17720at 3736.759 kb on - strand, within IAI46_17720at 3736.759 kb on - strand, within IAI46_17720at 3736.836 kb on + strand, within IAI46_17720at 3736.838 kb on + strand, within IAI46_17720at 3736.838 kb on + strand, within IAI46_17720at 3736.838 kb on + strand, within IAI46_17720at 3736.838 kb on + strand, within IAI46_17720at 3736.839 kb on - strand, within IAI46_17720at 3736.839 kb on - strand, within IAI46_17720at 3736.839 kb on - strand, within IAI46_17720at 3736.839 kb on - strand, within IAI46_17720at 3736.839 kb on - strand, within IAI46_17720at 3736.869 kb on - strand, within IAI46_17720at 3736.969 kb on + strandat 3736.969 kb on + strandat 3736.969 kb on + strandat 3736.970 kb on - strandat 3736.970 kb on - strandat 3737.158 kb on + strandat 3737.159 kb on - strandat 3737.159 kb on - strandat 3737.160 kb on + strandat 3737.160 kb on + strandat 3737.161 kb on - strandat 3737.245 kb on + strand, within IAI46_17725at 3737.245 kb on + strand, within IAI46_17725at 3737.245 kb on + strand, within IAI46_17725at 3737.245 kb on + strand, within IAI46_17725at 3737.246 kb on - strand, within IAI46_17725at 3737.246 kb on - strand, within IAI46_17725at 3737.250 kb on - strand, within IAI46_17725at 3737.370 kb on + strand, within IAI46_17725at 3737.402 kb on + strand, within IAI46_17725at 3737.422 kb on - strand, within IAI46_17725at 3737.422 kb on - strand, within IAI46_17725at 3737.424 kb on + strand, within IAI46_17725at 3737.489 kb on + strand, within IAI46_17725at 3737.489 kb on + strand, within IAI46_17725at 3737.541 kb on + strand, within IAI46_17725at 3737.542 kb on - strand, within IAI46_17725at 3737.544 kb on + strand, within IAI46_17725at 3737.545 kb on - strand, within IAI46_17725at 3737.587 kb on + strand, within IAI46_17725at 3737.596 kb on - strand, within IAI46_17725at 3737.630 kb on + strand, within IAI46_17725at 3737.718 kb on - strandat 3737.729 kb on + strandat 3737.769 kb on + strandat 3737.770 kb on - strandat 3737.808 kb on + strandat 3737.825 kb on - strandat 3737.890 kb on + strandat 3737.893 kb on - strandat 3737.944 kb on + strandat 3738.277 kb on + strand, within IAI46_17730at 3738.366 kb on - strand, within IAI46_17730at 3738.434 kb on - strand, within IAI46_17730at 3738.580 kb on - strand, within IAI46_17730at 3738.656 kb on - strand, within IAI46_17730

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,736,275 + IAI46_17720 0.36 +0.5
3,736,275 + IAI46_17720 0.36 -1.5
3,736,393 - IAI46_17720 0.46 +0.0
3,736,467 + IAI46_17720 0.52 -1.8
3,736,538 + IAI46_17720 0.57 -0.5
3,736,564 - IAI46_17720 0.60 +0.5
3,736,629 + IAI46_17720 0.65 +1.2
3,736,758 + IAI46_17720 0.76 -0.2
3,736,758 + IAI46_17720 0.76 +0.4
3,736,758 + IAI46_17720 0.76 -0.7
3,736,759 - IAI46_17720 0.76 +0.7
3,736,759 - IAI46_17720 0.76 -2.7
3,736,836 + IAI46_17720 0.82 +0.1
3,736,838 + IAI46_17720 0.82 +0.9
3,736,838 + IAI46_17720 0.82 -0.1
3,736,838 + IAI46_17720 0.82 -0.1
3,736,838 + IAI46_17720 0.82 +0.6
3,736,839 - IAI46_17720 0.82 +0.9
3,736,839 - IAI46_17720 0.82 -0.4
3,736,839 - IAI46_17720 0.82 -0.6
3,736,839 - IAI46_17720 0.82 +1.2
3,736,839 - IAI46_17720 0.82 -0.8
3,736,869 - IAI46_17720 0.85 -0.0
3,736,969 + -0.2
3,736,969 + -0.7
3,736,969 + -1.1
3,736,970 - -0.6
3,736,970 - -0.1
3,737,158 + +0.5
3,737,159 - +1.3
3,737,159 - -2.3
3,737,160 + -0.1
3,737,160 + +1.2
3,737,161 - +0.3
3,737,245 + IAI46_17725 0.12 +0.9
3,737,245 + IAI46_17725 0.12 -0.7
3,737,245 + IAI46_17725 0.12 -0.3
3,737,245 + IAI46_17725 0.12 -0.1
3,737,246 - IAI46_17725 0.12 -0.4
3,737,246 - IAI46_17725 0.12 +1.0
3,737,250 - IAI46_17725 0.13 -0.8
3,737,370 + IAI46_17725 0.33 -1.0
3,737,402 + IAI46_17725 0.38 +0.5
3,737,422 - IAI46_17725 0.42 -1.4
3,737,422 - IAI46_17725 0.42 +1.2
3,737,424 + IAI46_17725 0.42 +0.2
3,737,489 + IAI46_17725 0.53 +0.5
3,737,489 + IAI46_17725 0.53 -0.6
3,737,541 + IAI46_17725 0.61 -0.1
3,737,542 - IAI46_17725 0.62 -0.5
3,737,544 + IAI46_17725 0.62 -2.6
3,737,545 - IAI46_17725 0.62 +0.4
3,737,587 + IAI46_17725 0.69 +0.1
3,737,596 - IAI46_17725 0.71 +0.9
3,737,630 + IAI46_17725 0.76 +1.0
3,737,718 - -1.9
3,737,729 + +2.4
3,737,769 + +0.0
3,737,770 - +0.2
3,737,808 + +0.7
3,737,825 - +0.1
3,737,890 + +0.1
3,737,893 - +0.4
3,737,944 + +0.0
3,738,277 + IAI46_17730 0.26 +1.1
3,738,366 - IAI46_17730 0.31 +1.1
3,738,434 - IAI46_17730 0.34 -1.9
3,738,580 - IAI46_17730 0.42 +0.1
3,738,656 - IAI46_17730 0.46 +1.0

Or see this region's nucleotide sequence