Strain Fitness in Serratia liquefaciens MT49 around IAI46_17715

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_17710 and IAI46_17715 are separated by 710 nucleotidesIAI46_17715 and IAI46_17720 are separated by 858 nucleotides IAI46_17710: IAI46_17710 - NADH-quinone oxidoreductase subunit A, at 3,732,898 to 3,733,335 _17710 IAI46_17715: IAI46_17715 - transcriptional regulator LrhA, at 3,734,046 to 3,734,981 _17715 IAI46_17720: IAI46_17720 - pyridoxal phosphate-dependent aminotransferase, at 3,735,840 to 3,737,054 _17720 Position (kb) 3734 3735Strain fitness (log2 ratio) -2 -1 0 1at 3733.091 kb on + strand, within IAI46_17710at 3733.092 kb on - strand, within IAI46_17710at 3733.158 kb on + strand, within IAI46_17710at 3733.256 kb on - strand, within IAI46_17710at 3733.336 kb on - strandat 3733.336 kb on - strandat 3733.336 kb on - strandat 3733.340 kb on + strandat 3733.347 kb on - strandat 3733.393 kb on + strandat 3733.394 kb on - strandat 3733.411 kb on + strandat 3733.423 kb on - strandat 3733.427 kb on - strandat 3733.496 kb on + strandat 3733.529 kb on - strandat 3733.555 kb on + strandat 3733.585 kb on + strandat 3733.620 kb on + strandat 3733.621 kb on - strandat 3733.625 kb on - strandat 3733.693 kb on + strandat 3733.693 kb on + strandat 3733.820 kb on + strandat 3733.820 kb on + strandat 3733.820 kb on + strandat 3733.838 kb on - strandat 3734.047 kb on + strandat 3734.048 kb on - strandat 3734.191 kb on + strand, within IAI46_17715at 3734.191 kb on + strand, within IAI46_17715at 3734.191 kb on + strand, within IAI46_17715at 3734.192 kb on - strand, within IAI46_17715at 3734.198 kb on + strand, within IAI46_17715at 3734.294 kb on + strand, within IAI46_17715at 3734.295 kb on - strand, within IAI46_17715at 3734.332 kb on + strand, within IAI46_17715at 3734.333 kb on - strand, within IAI46_17715at 3734.447 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.515 kb on - strand, within IAI46_17715at 3734.692 kb on - strand, within IAI46_17715at 3734.769 kb on - strand, within IAI46_17715at 3734.922 kb on + strandat 3734.923 kb on - strandat 3734.935 kb on - strandat 3735.008 kb on - strandat 3735.019 kb on + strandat 3735.019 kb on + strandat 3735.020 kb on - strandat 3735.020 kb on - strandat 3735.020 kb on - strandat 3735.036 kb on - strandat 3735.036 kb on - strandat 3735.082 kb on + strandat 3735.082 kb on + strandat 3735.082 kb on + strandat 3735.083 kb on - strandat 3735.083 kb on - strandat 3735.083 kb on - strandat 3735.116 kb on + strandat 3735.160 kb on - strandat 3735.175 kb on + strandat 3735.175 kb on + strandat 3735.377 kb on - strandat 3735.398 kb on + strandat 3735.402 kb on + strandat 3735.403 kb on - strandat 3735.407 kb on - strandat 3735.417 kb on + strandat 3735.434 kb on + strandat 3735.446 kb on - strandat 3735.446 kb on - strandat 3735.491 kb on + strandat 3735.499 kb on + strandat 3735.500 kb on - strandat 3735.500 kb on - strandat 3735.522 kb on - strandat 3735.590 kb on + strandat 3735.601 kb on + strandat 3735.601 kb on + strandat 3735.601 kb on + strandat 3735.609 kb on + strandat 3735.609 kb on + strandat 3735.609 kb on + strandat 3735.631 kb on + strandat 3735.683 kb on - strandat 3735.693 kb on - strandat 3735.773 kb on + strandat 3735.774 kb on - strandat 3735.774 kb on - strandat 3735.774 kb on - strandat 3735.803 kb on - strandat 3735.839 kb on + strandat 3735.883 kb on - strandat 3735.914 kb on + strandat 3735.939 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
remove
3,733,091 + IAI46_17710 0.44 +1.4
3,733,092 - IAI46_17710 0.44 -1.6
3,733,158 + IAI46_17710 0.59 +0.2
3,733,256 - IAI46_17710 0.82 +0.1
3,733,336 - -0.4
3,733,336 - +0.1
3,733,336 - +0.9
3,733,340 + +0.8
3,733,347 - +0.7
3,733,393 + -0.9
3,733,394 - +0.7
3,733,411 + -2.3
3,733,423 - +1.0
3,733,427 - +0.9
3,733,496 + -0.3
3,733,529 - -0.4
3,733,555 + +0.3
3,733,585 + +0.6
3,733,620 + +0.6
3,733,621 - +0.9
3,733,625 - +0.4
3,733,693 + -0.6
3,733,693 + -0.4
3,733,820 + -0.4
3,733,820 + -0.9
3,733,820 + +0.3
3,733,838 - +0.5
3,734,047 + -0.3
3,734,048 - -0.3
3,734,191 + IAI46_17715 0.15 -0.5
3,734,191 + IAI46_17715 0.15 -0.7
3,734,191 + IAI46_17715 0.15 -0.0
3,734,192 - IAI46_17715 0.16 +1.0
3,734,198 + IAI46_17715 0.16 -0.3
3,734,294 + IAI46_17715 0.26 +0.5
3,734,295 - IAI46_17715 0.27 -0.3
3,734,332 + IAI46_17715 0.31 +0.0
3,734,333 - IAI46_17715 0.31 -1.0
3,734,447 - IAI46_17715 0.43 +0.3
3,734,515 - IAI46_17715 0.50 +0.9
3,734,515 - IAI46_17715 0.50 +1.1
3,734,515 - IAI46_17715 0.50 -0.1
3,734,515 - IAI46_17715 0.50 +1.0
3,734,515 - IAI46_17715 0.50 +0.4
3,734,515 - IAI46_17715 0.50 +0.3
3,734,692 - IAI46_17715 0.69 -0.7
3,734,769 - IAI46_17715 0.77 +0.2
3,734,922 + -0.3
3,734,923 - +0.5
3,734,935 - +0.3
3,735,008 - -0.7
3,735,019 + -0.1
3,735,019 + +1.1
3,735,020 - -0.6
3,735,020 - -0.7
3,735,020 - -0.3
3,735,036 - -0.9
3,735,036 - -0.3
3,735,082 + -0.0
3,735,082 + +0.6
3,735,082 + -0.1
3,735,083 - -1.9
3,735,083 - -0.5
3,735,083 - +0.0
3,735,116 + -0.7
3,735,160 - +0.9
3,735,175 + -0.1
3,735,175 + +0.2
3,735,377 - +0.3
3,735,398 + -1.1
3,735,402 + +1.3
3,735,403 - +0.7
3,735,407 - +0.3
3,735,417 + -0.6
3,735,434 + +0.5
3,735,446 - +0.5
3,735,446 - -0.3
3,735,491 + +0.6
3,735,499 + -0.1
3,735,500 - -0.4
3,735,500 - -0.6
3,735,522 - -0.4
3,735,590 + +0.5
3,735,601 + +1.2
3,735,601 + -0.7
3,735,601 + +1.1
3,735,609 + +0.1
3,735,609 + +1.1
3,735,609 + +0.3
3,735,631 + +0.1
3,735,683 - -0.7
3,735,693 - +0.6
3,735,773 + -0.1
3,735,774 - +0.7
3,735,774 - -0.2
3,735,774 - +0.3
3,735,803 - +0.7
3,735,839 + +0.9
3,735,883 - -0.4
3,735,914 + -0.4
3,735,939 - +0.5

Or see this region's nucleotide sequence