Strain Fitness in Serratia liquefaciens MT49 around IAI46_15595

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15590 and IAI46_15595 are separated by 183 nucleotidesIAI46_15595 and IAI46_15600 are separated by 781 nucleotides IAI46_15590: IAI46_15590 - NAD-dependent epimerase/dehydratase family protein, at 3,268,409 to 3,269,365 _15590 IAI46_15595: IAI46_15595 - winged helix-turn-helix domain-containing protein, at 3,269,549 to 3,270,448 _15595 IAI46_15600: IAI46_15600 - NarK family nitrate/nitrite MFS transporter, at 3,271,230 to 3,272,624 _15600 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -2 -1 0 1 2at 3268.574 kb on + strand, within IAI46_15590at 3268.602 kb on - strand, within IAI46_15590at 3268.602 kb on - strand, within IAI46_15590at 3268.605 kb on + strand, within IAI46_15590at 3268.619 kb on - strand, within IAI46_15590at 3268.624 kb on + strand, within IAI46_15590at 3268.625 kb on - strand, within IAI46_15590at 3268.710 kb on + strand, within IAI46_15590at 3268.711 kb on - strand, within IAI46_15590at 3268.734 kb on + strand, within IAI46_15590at 3268.764 kb on + strand, within IAI46_15590at 3268.764 kb on + strand, within IAI46_15590at 3268.765 kb on - strand, within IAI46_15590at 3268.780 kb on + strand, within IAI46_15590at 3268.781 kb on - strand, within IAI46_15590at 3268.935 kb on + strand, within IAI46_15590at 3268.936 kb on - strand, within IAI46_15590at 3269.020 kb on - strand, within IAI46_15590at 3269.116 kb on - strand, within IAI46_15590at 3269.116 kb on - strand, within IAI46_15590at 3269.125 kb on + strand, within IAI46_15590at 3269.125 kb on + strand, within IAI46_15590at 3269.125 kb on + strand, within IAI46_15590at 3269.214 kb on - strand, within IAI46_15590at 3269.348 kb on + strandat 3269.366 kb on - strandat 3269.387 kb on + strandat 3269.425 kb on + strandat 3269.425 kb on + strandat 3269.488 kb on - strandat 3269.537 kb on + strandat 3270.017 kb on - strand, within IAI46_15595at 3270.114 kb on - strand, within IAI46_15595at 3270.211 kb on + strand, within IAI46_15595at 3270.280 kb on - strand, within IAI46_15595at 3270.378 kb on - strandat 3270.413 kb on + strandat 3271.077 kb on + strandat 3271.078 kb on - strandat 3271.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,268,574 + IAI46_15590 0.17 -0.4
3,268,602 - IAI46_15590 0.20 +0.6
3,268,602 - IAI46_15590 0.20 -0.6
3,268,605 + IAI46_15590 0.20 -0.3
3,268,619 - IAI46_15590 0.22 -2.2
3,268,624 + IAI46_15590 0.22 +0.6
3,268,625 - IAI46_15590 0.23 -0.4
3,268,710 + IAI46_15590 0.31 +0.3
3,268,711 - IAI46_15590 0.32 +0.2
3,268,734 + IAI46_15590 0.34 -0.1
3,268,764 + IAI46_15590 0.37 +0.5
3,268,764 + IAI46_15590 0.37 +1.2
3,268,765 - IAI46_15590 0.37 -0.1
3,268,780 + IAI46_15590 0.39 -0.9
3,268,781 - IAI46_15590 0.39 -0.6
3,268,935 + IAI46_15590 0.55 -2.2
3,268,936 - IAI46_15590 0.55 -0.6
3,269,020 - IAI46_15590 0.64 -0.3
3,269,116 - IAI46_15590 0.74 -0.8
3,269,116 - IAI46_15590 0.74 +0.8
3,269,125 + IAI46_15590 0.75 -0.1
3,269,125 + IAI46_15590 0.75 -1.0
3,269,125 + IAI46_15590 0.75 -0.9
3,269,214 - IAI46_15590 0.84 +2.1
3,269,348 + +0.7
3,269,366 - -0.5
3,269,387 + -0.1
3,269,425 + +0.1
3,269,425 + -0.4
3,269,488 - -0.1
3,269,537 + -0.6
3,270,017 - IAI46_15595 0.52 -0.6
3,270,114 - IAI46_15595 0.63 +0.8
3,270,211 + IAI46_15595 0.74 -1.1
3,270,280 - IAI46_15595 0.81 +0.9
3,270,378 - -0.9
3,270,413 + +1.3
3,271,077 + -1.0
3,271,078 - +1.7
3,271,238 + +0.5

Or see this region's nucleotide sequence