Strain Fitness in Serratia liquefaciens MT49 around IAI46_15550

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15545 and IAI46_15550 overlap by 4 nucleotidesIAI46_15550 and IAI46_15555 are separated by 1 nucleotides IAI46_15545: IAI46_15545 - carbohydrate-binding protein CenC, at 3,256,923 to 3,258,809 _15545 IAI46_15550: IAI46_15550 - glycosyltransferase family 2 protein, at 3,258,806 to 3,259,549 _15550 IAI46_15555: IAI46_15555 - glycosyltransferase family 4 protein, at 3,259,551 to 3,260,612 _15555 Position (kb) 3258 3259 3260Strain fitness (log2 ratio) -2 -1 0 1 2at 3257.819 kb on - strand, within IAI46_15545at 3257.822 kb on + strand, within IAI46_15545at 3257.822 kb on + strand, within IAI46_15545at 3257.823 kb on - strand, within IAI46_15545at 3257.824 kb on + strand, within IAI46_15545at 3257.825 kb on - strand, within IAI46_15545at 3257.846 kb on - strand, within IAI46_15545at 3257.846 kb on - strand, within IAI46_15545at 3257.851 kb on + strand, within IAI46_15545at 3257.851 kb on + strand, within IAI46_15545at 3257.852 kb on - strand, within IAI46_15545at 3257.852 kb on - strand, within IAI46_15545at 3257.898 kb on + strand, within IAI46_15545at 3257.898 kb on + strand, within IAI46_15545at 3257.920 kb on + strand, within IAI46_15545at 3257.926 kb on + strand, within IAI46_15545at 3257.926 kb on + strand, within IAI46_15545at 3257.926 kb on + strand, within IAI46_15545at 3257.927 kb on - strand, within IAI46_15545at 3257.927 kb on - strand, within IAI46_15545at 3257.927 kb on - strand, within IAI46_15545at 3257.927 kb on - strand, within IAI46_15545at 3257.927 kb on - strand, within IAI46_15545at 3257.968 kb on + strand, within IAI46_15545at 3257.969 kb on - strand, within IAI46_15545at 3258.080 kb on - strand, within IAI46_15545at 3258.191 kb on + strand, within IAI46_15545at 3258.192 kb on - strand, within IAI46_15545at 3258.347 kb on - strand, within IAI46_15545at 3258.347 kb on - strand, within IAI46_15545at 3258.439 kb on + strand, within IAI46_15545at 3258.793 kb on - strandat 3258.831 kb on + strandat 3258.837 kb on + strandat 3258.837 kb on + strandat 3258.853 kb on - strandat 3258.892 kb on - strand, within IAI46_15550at 3258.893 kb on + strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3258.894 kb on - strand, within IAI46_15550at 3259.033 kb on - strand, within IAI46_15550at 3259.091 kb on - strand, within IAI46_15550at 3259.132 kb on + strand, within IAI46_15550at 3259.133 kb on - strand, within IAI46_15550at 3259.135 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.198 kb on - strand, within IAI46_15550at 3259.222 kb on - strand, within IAI46_15550at 3259.241 kb on - strand, within IAI46_15550at 3259.301 kb on - strand, within IAI46_15550at 3259.302 kb on + strand, within IAI46_15550at 3259.303 kb on - strand, within IAI46_15550at 3259.374 kb on + strand, within IAI46_15550at 3259.446 kb on + strand, within IAI46_15550at 3259.465 kb on - strand, within IAI46_15550at 3259.590 kb on - strandat 3259.845 kb on + strand, within IAI46_15555at 3259.846 kb on - strand, within IAI46_15555at 3260.052 kb on + strand, within IAI46_15555at 3260.255 kb on - strand, within IAI46_15555at 3260.255 kb on - strand, within IAI46_15555at 3260.318 kb on - strand, within IAI46_15555at 3260.364 kb on + strand, within IAI46_15555at 3260.365 kb on - strand, within IAI46_15555at 3260.372 kb on - strand, within IAI46_15555at 3260.432 kb on + strand, within IAI46_15555at 3260.433 kb on - strand, within IAI46_15555

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,257,819 - IAI46_15545 0.47 -1.6
3,257,822 + IAI46_15545 0.48 +0.1
3,257,822 + IAI46_15545 0.48 +0.7
3,257,823 - IAI46_15545 0.48 +1.0
3,257,824 + IAI46_15545 0.48 +0.1
3,257,825 - IAI46_15545 0.48 -0.2
3,257,846 - IAI46_15545 0.49 -0.3
3,257,846 - IAI46_15545 0.49 +1.6
3,257,851 + IAI46_15545 0.49 +0.2
3,257,851 + IAI46_15545 0.49 +0.1
3,257,852 - IAI46_15545 0.49 -1.1
3,257,852 - IAI46_15545 0.49 +0.1
3,257,898 + IAI46_15545 0.52 +0.9
3,257,898 + IAI46_15545 0.52 +0.7
3,257,920 + IAI46_15545 0.53 +1.4
3,257,926 + IAI46_15545 0.53 -0.5
3,257,926 + IAI46_15545 0.53 -1.1
3,257,926 + IAI46_15545 0.53 +1.9
3,257,927 - IAI46_15545 0.53 -2.1
3,257,927 - IAI46_15545 0.53 -0.9
3,257,927 - IAI46_15545 0.53 -0.9
3,257,927 - IAI46_15545 0.53 +0.2
3,257,927 - IAI46_15545 0.53 -0.9
3,257,968 + IAI46_15545 0.55 +1.3
3,257,969 - IAI46_15545 0.55 -0.2
3,258,080 - IAI46_15545 0.61 +0.6
3,258,191 + IAI46_15545 0.67 -0.3
3,258,192 - IAI46_15545 0.67 +1.2
3,258,347 - IAI46_15545 0.75 -1.1
3,258,347 - IAI46_15545 0.75 +1.1
3,258,439 + IAI46_15545 0.80 +0.3
3,258,793 - +1.8
3,258,831 + +0.1
3,258,837 + -1.2
3,258,837 + -0.0
3,258,853 - +0.9
3,258,892 - IAI46_15550 0.12 +0.2
3,258,893 + IAI46_15550 0.12 -1.0
3,258,894 - IAI46_15550 0.12 +0.0
3,258,894 - IAI46_15550 0.12 -1.2
3,258,894 - IAI46_15550 0.12 -0.6
3,259,033 - IAI46_15550 0.31 +0.8
3,259,091 - IAI46_15550 0.38 -0.1
3,259,132 + IAI46_15550 0.44 +0.1
3,259,133 - IAI46_15550 0.44 -1.3
3,259,135 - IAI46_15550 0.44 +0.2
3,259,198 - IAI46_15550 0.53 +0.0
3,259,198 - IAI46_15550 0.53 +0.9
3,259,198 - IAI46_15550 0.53 +0.7
3,259,222 - IAI46_15550 0.56 +1.5
3,259,241 - IAI46_15550 0.58 +1.5
3,259,301 - IAI46_15550 0.67 -1.4
3,259,302 + IAI46_15550 0.67 +0.9
3,259,303 - IAI46_15550 0.67 -0.6
3,259,374 + IAI46_15550 0.76 +0.4
3,259,446 + IAI46_15550 0.86 +0.3
3,259,465 - IAI46_15550 0.89 +0.1
3,259,590 - -0.3
3,259,845 + IAI46_15555 0.28 -0.3
3,259,846 - IAI46_15555 0.28 -0.6
3,260,052 + IAI46_15555 0.47 +0.5
3,260,255 - IAI46_15555 0.66 +0.1
3,260,255 - IAI46_15555 0.66 -0.3
3,260,318 - IAI46_15555 0.72 +0.2
3,260,364 + IAI46_15555 0.77 -0.6
3,260,365 - IAI46_15555 0.77 -1.0
3,260,372 - IAI46_15555 0.77 +0.4
3,260,432 + IAI46_15555 0.83 +0.1
3,260,433 - IAI46_15555 0.83 -1.1

Or see this region's nucleotide sequence