Strain Fitness in Serratia liquefaciens MT49 around IAI46_14750

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14740 and IAI46_14745 are separated by 154 nucleotidesIAI46_14745 and IAI46_14750 are separated by 83 nucleotidesIAI46_14750 and IAI46_14755 are separated by 70 nucleotidesIAI46_14755 and IAI46_14760 are separated by 39 nucleotidesIAI46_14760 and IAI46_14765 are separated by 88 nucleotides IAI46_14740: IAI46_14740 - phosphotransferase, at 3,122,056 to 3,123,696 _14740 IAI46_14745: IAI46_14745 - lipoprotein, at 3,123,851 to 3,124,414 _14745 IAI46_14750: IAI46_14750 - hypothetical protein, at 3,124,498 to 3,124,857 _14750 IAI46_14755: IAI46_14755 - ASCH domain-containing protein, at 3,124,928 to 3,125,236 _14755 IAI46_14760: IAI46_14760 - YebG family protein, at 3,125,276 to 3,125,599 _14760 IAI46_14765: IAI46_14765 - ATP-dependent RNA helicase DbpA, at 3,125,688 to 3,127,070 _14765 Position (kb) 3124 3125Strain fitness (log2 ratio) -1 0 1at 3123.550 kb on - strandat 3123.550 kb on - strandat 3123.721 kb on + strandat 3123.722 kb on - strandat 3123.743 kb on + strandat 3123.796 kb on + strandat 3123.835 kb on + strandat 3123.836 kb on - strandat 3123.926 kb on + strand, within IAI46_14745at 3124.036 kb on - strand, within IAI46_14745at 3124.163 kb on + strand, within IAI46_14745at 3124.164 kb on - strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.333 kb on + strand, within IAI46_14745at 3124.396 kb on + strandat 3124.479 kb on - strandat 3124.706 kb on + strand, within IAI46_14750at 3124.804 kb on - strand, within IAI46_14750at 3125.043 kb on - strand, within IAI46_14755at 3125.124 kb on - strand, within IAI46_14755at 3125.170 kb on + strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.269 kb on + strandat 3125.277 kb on + strandat 3125.278 kb on - strandat 3125.278 kb on - strandat 3125.581 kb on - strandat 3125.656 kb on - strandat 3125.656 kb on - strandat 3125.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,123,550 - +0.5
3,123,550 - -0.4
3,123,721 + -1.4
3,123,722 - +0.8
3,123,743 + -0.1
3,123,796 + +1.4
3,123,835 + +0.5
3,123,836 - -0.4
3,123,926 + IAI46_14745 0.13 +1.4
3,124,036 - IAI46_14745 0.33 +0.4
3,124,163 + IAI46_14745 0.55 +0.7
3,124,164 - IAI46_14745 0.55 +1.4
3,124,214 + IAI46_14745 0.64 -0.0
3,124,214 + IAI46_14745 0.64 +1.1
3,124,333 + IAI46_14745 0.85 -0.6
3,124,396 + +0.0
3,124,479 - -0.1
3,124,706 + IAI46_14750 0.58 -0.7
3,124,804 - IAI46_14750 0.85 -0.1
3,125,043 - IAI46_14755 0.37 -1.7
3,125,124 - IAI46_14755 0.63 +0.7
3,125,170 + IAI46_14755 0.78 +0.3
3,125,171 - IAI46_14755 0.79 -0.4
3,125,171 - IAI46_14755 0.79 -0.1
3,125,269 + +1.0
3,125,277 + +0.6
3,125,278 - +0.1
3,125,278 - +0.9
3,125,581 - +0.4
3,125,656 - -0.6
3,125,656 - -1.0
3,125,786 - -0.5

Or see this region's nucleotide sequence