Strain Fitness in Serratia liquefaciens MT49 around IAI46_14655

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14645 and IAI46_14650 are separated by 198 nucleotidesIAI46_14650 and IAI46_14655 are separated by 241 nucleotidesIAI46_14655 and IAI46_14660 are separated by 74 nucleotidesIAI46_14660 and IAI46_14665 are separated by 102 nucleotides IAI46_14645: IAI46_14645 - aspartate--tRNA ligase, at 3,103,161 to 3,104,951 _14645 IAI46_14650: IAI46_14650 - zinc ribbon domain-containing protein, at 3,105,150 to 3,105,338 _14650 IAI46_14655: IAI46_14655 - hydrolase, at 3,105,580 to 3,106,158 _14655 IAI46_14660: IAI46_14660 - DUF72 domain-containing protein, at 3,106,233 to 3,107,048 _14660 IAI46_14665: IAI46_14665 - MAPEG family protein, at 3,107,151 to 3,107,546 _14665 Position (kb) 3105 3106 3107Strain fitness (log2 ratio) -2 -1 0 1at 3105.113 kb on - strandat 3105.146 kb on - strandat 3105.148 kb on - strandat 3105.243 kb on - strand, within IAI46_14650at 3105.323 kb on - strandat 3105.323 kb on - strandat 3105.323 kb on - strandat 3105.339 kb on - strandat 3105.403 kb on - strandat 3105.431 kb on + strandat 3105.432 kb on - strandat 3105.432 kb on - strandat 3105.505 kb on + strandat 3105.505 kb on + strandat 3105.505 kb on + strandat 3105.506 kb on - strandat 3105.535 kb on - strandat 3105.615 kb on - strandat 3105.615 kb on - strandat 3105.618 kb on - strandat 3105.969 kb on + strand, within IAI46_14655at 3105.981 kb on + strand, within IAI46_14655at 3106.031 kb on + strand, within IAI46_14655at 3106.032 kb on - strand, within IAI46_14655at 3106.156 kb on + strandat 3106.163 kb on - strandat 3106.169 kb on + strandat 3106.226 kb on + strandat 3106.227 kb on - strandat 3106.227 kb on - strandat 3106.227 kb on - strandat 3106.236 kb on + strandat 3106.236 kb on + strandat 3106.236 kb on + strandat 3106.239 kb on - strandat 3106.302 kb on + strandat 3106.303 kb on - strandat 3106.311 kb on + strandat 3106.334 kb on + strand, within IAI46_14660at 3106.454 kb on + strand, within IAI46_14660at 3106.604 kb on + strand, within IAI46_14660at 3106.605 kb on - strand, within IAI46_14660at 3106.605 kb on - strand, within IAI46_14660at 3106.605 kb on - strand, within IAI46_14660at 3106.679 kb on - strand, within IAI46_14660at 3106.853 kb on + strand, within IAI46_14660at 3106.927 kb on + strand, within IAI46_14660at 3106.928 kb on - strand, within IAI46_14660at 3106.928 kb on - strand, within IAI46_14660at 3106.928 kb on - strand, within IAI46_14660at 3106.928 kb on - strand, within IAI46_14660at 3106.931 kb on + strand, within IAI46_14660at 3106.931 kb on + strand, within IAI46_14660at 3106.932 kb on - strand, within IAI46_14660at 3107.068 kb on - strandat 3107.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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3,105,113 - +1.2
3,105,146 - +0.2
3,105,148 - -0.7
3,105,243 - IAI46_14650 0.49 +0.3
3,105,323 - -1.1
3,105,323 - +1.1
3,105,323 - -0.0
3,105,339 - -1.9
3,105,403 - -0.6
3,105,431 + -1.5
3,105,432 - -1.3
3,105,432 - +0.2
3,105,505 + -0.2
3,105,505 + -0.1
3,105,505 + +1.2
3,105,506 - +1.1
3,105,535 - -1.0
3,105,615 - +0.3
3,105,615 - +0.9
3,105,618 - -0.8
3,105,969 + IAI46_14655 0.67 +0.0
3,105,981 + IAI46_14655 0.69 +1.3
3,106,031 + IAI46_14655 0.78 -0.2
3,106,032 - IAI46_14655 0.78 +0.1
3,106,156 + +0.4
3,106,163 - -0.3
3,106,169 + +0.2
3,106,226 + -2.3
3,106,227 - -2.0
3,106,227 - +1.2
3,106,227 - +0.0
3,106,236 + -0.5
3,106,236 + -0.7
3,106,236 + +0.6
3,106,239 - +0.8
3,106,302 + -1.1
3,106,303 - -0.4
3,106,311 + -1.6
3,106,334 + IAI46_14660 0.12 -0.1
3,106,454 + IAI46_14660 0.27 -0.4
3,106,604 + IAI46_14660 0.45 -2.2
3,106,605 - IAI46_14660 0.46 +0.2
3,106,605 - IAI46_14660 0.46 -0.4
3,106,605 - IAI46_14660 0.46 -0.3
3,106,679 - IAI46_14660 0.55 +0.5
3,106,853 + IAI46_14660 0.76 +0.5
3,106,927 + IAI46_14660 0.85 +0.4
3,106,928 - IAI46_14660 0.85 +0.8
3,106,928 - IAI46_14660 0.85 +0.5
3,106,928 - IAI46_14660 0.85 -1.2
3,106,928 - IAI46_14660 0.85 -0.0
3,106,931 + IAI46_14660 0.86 -0.4
3,106,931 + IAI46_14660 0.86 +0.5
3,106,932 - IAI46_14660 0.86 -0.5
3,107,068 - -0.2
3,107,109 - -0.2

Or see this region's nucleotide sequence