Strain Fitness in Serratia liquefaciens MT49 around IAI46_14110

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14105 and IAI46_14110 are separated by 238 nucleotidesIAI46_14110 and IAI46_14115 are separated by 180 nucleotidesIAI46_14115 and IAI46_14120 are separated by 338 nucleotides IAI46_14105: IAI46_14105 - TonB system transport protein TonB, at 2,994,709 to 2,995,455 _14105 IAI46_14110: IAI46_14110 - epoxyqueuosine reductase QueH, at 2,995,694 to 2,996,347 _14110 IAI46_14115: IAI46_14115 - YciI family protein, at 2,996,528 to 2,996,824 _14115 IAI46_14120: IAI46_14120 - DUF1471 domain-containing protein, at 2,997,163 to 2,997,426 _14120 Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -2 -1 0 1 2at 2994.793 kb on - strand, within IAI46_14105at 2994.825 kb on + strand, within IAI46_14105at 2995.361 kb on + strand, within IAI46_14105at 2995.387 kb on - strandat 2995.456 kb on - strandat 2995.456 kb on - strandat 2995.528 kb on + strandat 2995.529 kb on - strandat 2995.614 kb on + strandat 2995.614 kb on + strandat 2995.614 kb on + strandat 2995.797 kb on + strand, within IAI46_14110at 2995.798 kb on - strand, within IAI46_14110at 2995.798 kb on - strand, within IAI46_14110at 2995.809 kb on + strand, within IAI46_14110at 2995.809 kb on + strand, within IAI46_14110at 2995.809 kb on + strand, within IAI46_14110at 2995.873 kb on - strand, within IAI46_14110at 2996.167 kb on + strand, within IAI46_14110at 2996.168 kb on - strand, within IAI46_14110at 2996.179 kb on - strand, within IAI46_14110at 2996.394 kb on + strandat 2996.395 kb on - strandat 2996.502 kb on + strandat 2996.504 kb on + strandat 2996.794 kb on - strand, within IAI46_14115at 2996.917 kb on + strandat 2996.935 kb on + strandat 2996.990 kb on + strandat 2997.008 kb on + strandat 2997.009 kb on - strandat 2997.037 kb on - strandat 2997.037 kb on - strandat 2997.047 kb on + strandat 2997.047 kb on + strandat 2997.105 kb on + strandat 2997.106 kb on - strandat 2997.111 kb on + strandat 2997.111 kb on + strandat 2997.111 kb on + strandat 2997.112 kb on - strandat 2997.112 kb on - strandat 2997.135 kb on - strandat 2997.191 kb on + strand, within IAI46_14120at 2997.301 kb on - strand, within IAI46_14120at 2997.301 kb on - strand, within IAI46_14120at 2997.331 kb on - strand, within IAI46_14120

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,994,793 - IAI46_14105 0.11 +0.0
2,994,825 + IAI46_14105 0.16 -1.0
2,995,361 + IAI46_14105 0.87 -1.0
2,995,387 - -1.2
2,995,456 - +0.0
2,995,456 - -0.1
2,995,528 + -0.3
2,995,529 - +0.5
2,995,614 + +0.4
2,995,614 + -0.5
2,995,614 + +0.0
2,995,797 + IAI46_14110 0.16 +0.6
2,995,798 - IAI46_14110 0.16 -1.1
2,995,798 - IAI46_14110 0.16 -0.3
2,995,809 + IAI46_14110 0.18 -1.0
2,995,809 + IAI46_14110 0.18 +1.0
2,995,809 + IAI46_14110 0.18 +0.0
2,995,873 - IAI46_14110 0.27 +1.3
2,996,167 + IAI46_14110 0.72 +0.0
2,996,168 - IAI46_14110 0.72 -0.4
2,996,179 - IAI46_14110 0.74 +0.2
2,996,394 + +0.1
2,996,395 - -0.1
2,996,502 + -0.1
2,996,504 + -0.4
2,996,794 - IAI46_14115 0.90 +2.0
2,996,917 + -0.2
2,996,935 + -0.2
2,996,990 + -1.2
2,997,008 + +0.2
2,997,009 - +0.5
2,997,037 - -1.6
2,997,037 - -0.1
2,997,047 + +0.7
2,997,047 + +0.7
2,997,105 + -0.5
2,997,106 - +0.1
2,997,111 + -2.0
2,997,111 + -1.9
2,997,111 + +0.3
2,997,112 - +0.1
2,997,112 - -0.1
2,997,135 - +0.1
2,997,191 + IAI46_14120 0.11 -2.0
2,997,301 - IAI46_14120 0.52 -0.2
2,997,301 - IAI46_14120 0.52 -0.6
2,997,331 - IAI46_14120 0.64 -1.5

Or see this region's nucleotide sequence