Strain Fitness in Serratia liquefaciens MT49 around IAI46_14065

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14055 and IAI46_14060 are separated by 283 nucleotidesIAI46_14060 and IAI46_14065 are separated by 39 nucleotidesIAI46_14065 and IAI46_14070 are separated by 107 nucleotides IAI46_14055: IAI46_14055 - outer membrane protein OmpW, at 2,984,417 to 2,985,061 _14055 IAI46_14060: IAI46_14060 - YkgJ family cysteine cluster protein, at 2,985,345 to 2,985,785 _14060 IAI46_14065: IAI46_14065 - UPF0259 family protein, at 2,985,825 to 2,986,577 _14065 IAI46_14070: IAI46_14070 - IS3 family transposase, at 2,986,685 to 2,987,904 _14070 Position (kb) 2985 2986 2987Strain fitness (log2 ratio) -1 0 1 2at 2984.870 kb on - strand, within IAI46_14055at 2984.872 kb on - strand, within IAI46_14055at 2984.899 kb on + strand, within IAI46_14055at 2984.902 kb on + strand, within IAI46_14055at 2984.931 kb on - strand, within IAI46_14055at 2985.017 kb on - strandat 2985.017 kb on - strandat 2985.038 kb on + strandat 2985.102 kb on - strandat 2985.110 kb on - strandat 2985.120 kb on - strandat 2985.192 kb on + strandat 2985.286 kb on + strandat 2985.322 kb on + strandat 2985.322 kb on + strandat 2985.411 kb on + strand, within IAI46_14060at 2985.488 kb on + strand, within IAI46_14060at 2985.564 kb on - strand, within IAI46_14060at 2985.771 kb on - strandat 2985.771 kb on - strandat 2986.557 kb on + strandat 2986.557 kb on + strandat 2986.558 kb on - strandat 2986.559 kb on + strandat 2986.726 kb on - strandat 2986.822 kb on + strand, within IAI46_14070at 2986.838 kb on - strand, within IAI46_14070at 2986.842 kb on - strand, within IAI46_14070at 2986.900 kb on + strand, within IAI46_14070at 2987.412 kb on - strand, within IAI46_14070at 2987.414 kb on + strand, within IAI46_14070at 2987.414 kb on + strand, within IAI46_14070at 2987.435 kb on + strand, within IAI46_14070at 2987.435 kb on + strand, within IAI46_14070at 2987.436 kb on - strand, within IAI46_14070at 2987.448 kb on + strand, within IAI46_14070at 2987.448 kb on + strand, within IAI46_14070at 2987.455 kb on + strand, within IAI46_14070at 2987.482 kb on + strand, within IAI46_14070at 2987.483 kb on - strand, within IAI46_14070

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,984,870 - IAI46_14055 0.70 +0.6
2,984,872 - IAI46_14055 0.71 -1.4
2,984,899 + IAI46_14055 0.75 +0.2
2,984,902 + IAI46_14055 0.75 -0.6
2,984,931 - IAI46_14055 0.80 -0.7
2,985,017 - +0.2
2,985,017 - +0.2
2,985,038 + +0.7
2,985,102 - +0.9
2,985,110 - -0.3
2,985,120 - +0.4
2,985,192 + -0.1
2,985,286 + +0.5
2,985,322 + -0.4
2,985,322 + +0.6
2,985,411 + IAI46_14060 0.15 -0.2
2,985,488 + IAI46_14060 0.32 +0.8
2,985,564 - IAI46_14060 0.50 -1.1
2,985,771 - -1.6
2,985,771 - -1.3
2,986,557 + -0.9
2,986,557 + +1.4
2,986,558 - +1.0
2,986,559 + +0.3
2,986,726 - +1.9
2,986,822 + IAI46_14070 0.11 +0.6
2,986,838 - IAI46_14070 0.13 +0.6
2,986,842 - IAI46_14070 0.13 -0.1
2,986,900 + IAI46_14070 0.18 +0.1
2,987,412 - IAI46_14070 0.60 +0.0
2,987,414 + IAI46_14070 0.60 -0.3
2,987,414 + IAI46_14070 0.60 +0.5
2,987,435 + IAI46_14070 0.61 +0.1
2,987,435 + IAI46_14070 0.61 -1.1
2,987,436 - IAI46_14070 0.62 +1.0
2,987,448 + IAI46_14070 0.63 -0.4
2,987,448 + IAI46_14070 0.63 +1.0
2,987,455 + IAI46_14070 0.63 +0.3
2,987,482 + IAI46_14070 0.65 -0.4
2,987,483 - IAI46_14070 0.65 +0.2

Or see this region's nucleotide sequence