Strain Fitness in Serratia liquefaciens MT49 around IAI46_13880

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13875 and IAI46_13880 are separated by 200 nucleotidesIAI46_13880 and IAI46_13885 are separated by 147 nucleotides IAI46_13875: IAI46_13875 - carbon starvation protein A, at 2,946,909 to 2,948,966 _13875 IAI46_13880: IAI46_13880 - fructose-6-phosphate aldolase, at 2,949,167 to 2,949,832 _13880 IAI46_13885: IAI46_13885 - glycyl-radical enzyme activating protein, at 2,949,980 to 2,950,879 _13885 Position (kb) 2949 2950Strain fitness (log2 ratio) -2 -1 0 1at 2948.381 kb on + strand, within IAI46_13875at 2948.420 kb on - strand, within IAI46_13875at 2948.424 kb on - strand, within IAI46_13875at 2948.493 kb on + strand, within IAI46_13875at 2948.528 kb on + strand, within IAI46_13875at 2948.528 kb on + strand, within IAI46_13875at 2948.529 kb on - strand, within IAI46_13875at 2948.625 kb on + strand, within IAI46_13875at 2948.626 kb on - strand, within IAI46_13875at 2948.664 kb on - strand, within IAI46_13875at 2949.078 kb on + strandat 2949.158 kb on - strandat 2949.182 kb on - strandat 2949.182 kb on - strandat 2949.442 kb on - strand, within IAI46_13880at 2949.442 kb on - strand, within IAI46_13880at 2949.453 kb on + strand, within IAI46_13880at 2949.499 kb on - strand, within IAI46_13880at 2949.647 kb on - strand, within IAI46_13880at 2949.834 kb on - strandat 2949.877 kb on + strandat 2949.877 kb on + strandat 2949.877 kb on + strandat 2949.878 kb on - strandat 2949.878 kb on - strandat 2949.878 kb on - strandat 2950.001 kb on + strandat 2950.035 kb on + strandat 2950.441 kb on + strand, within IAI46_13885at 2950.465 kb on + strand, within IAI46_13885at 2950.482 kb on + strand, within IAI46_13885at 2950.483 kb on - strand, within IAI46_13885at 2950.581 kb on + strand, within IAI46_13885at 2950.760 kb on + strand, within IAI46_13885at 2950.761 kb on - strand, within IAI46_13885at 2950.803 kb on + strandat 2950.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,948,381 + IAI46_13875 0.72 -0.4
2,948,420 - IAI46_13875 0.73 -0.3
2,948,424 - IAI46_13875 0.74 +0.6
2,948,493 + IAI46_13875 0.77 -0.3
2,948,528 + IAI46_13875 0.79 -0.3
2,948,528 + IAI46_13875 0.79 +0.1
2,948,529 - IAI46_13875 0.79 +0.8
2,948,625 + IAI46_13875 0.83 +0.2
2,948,626 - IAI46_13875 0.83 +1.3
2,948,664 - IAI46_13875 0.85 -0.5
2,949,078 + +0.9
2,949,158 - +1.3
2,949,182 - +0.8
2,949,182 - +1.0
2,949,442 - IAI46_13880 0.41 -1.4
2,949,442 - IAI46_13880 0.41 -0.3
2,949,453 + IAI46_13880 0.43 -0.4
2,949,499 - IAI46_13880 0.50 +0.7
2,949,647 - IAI46_13880 0.72 +0.3
2,949,834 - -0.9
2,949,877 + -0.6
2,949,877 + +0.1
2,949,877 + +1.3
2,949,878 - -1.0
2,949,878 - -0.3
2,949,878 - +1.2
2,950,001 + +1.0
2,950,035 + +0.2
2,950,441 + IAI46_13885 0.51 +0.4
2,950,465 + IAI46_13885 0.54 +0.3
2,950,482 + IAI46_13885 0.56 -1.4
2,950,483 - IAI46_13885 0.56 +1.3
2,950,581 + IAI46_13885 0.67 -1.0
2,950,760 + IAI46_13885 0.87 -0.0
2,950,761 - IAI46_13885 0.87 +1.6
2,950,803 + -2.1
2,950,826 + -0.5

Or see this region's nucleotide sequence