Strain Fitness in Serratia liquefaciens MT49 around IAI46_13775

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13765 and IAI46_13770 are separated by 60 nucleotidesIAI46_13770 and IAI46_13775 are separated by 756 nucleotidesIAI46_13775 and IAI46_13780 overlap by 17 nucleotidesIAI46_13780 and IAI46_13785 overlap by 4 nucleotides IAI46_13765: IAI46_13765 - hypothetical protein, at 2,930,100 to 2,930,249 _13765 IAI46_13770: IAI46_13770 - hypothetical protein, at 2,930,310 to 2,930,465 _13770 IAI46_13775: IAI46_13775 - chromosome partitioning protein ParB, at 2,931,222 to 2,932,064 _13775 IAI46_13780: IAI46_13780 - hypothetical protein, at 2,932,048 to 2,932,482 _13780 IAI46_13785: IAI46_13785 - phosphoadenosine phosphosulfate reductase family protein, at 2,932,479 to 2,933,396 _13785 Position (kb) 2931 2932 2933Strain fitness (log2 ratio) -3 -2 -1 0 1at 2930.294 kb on + strandat 2930.510 kb on + strandat 2930.604 kb on + strandat 2930.604 kb on + strandat 2930.649 kb on - strandat 2930.650 kb on + strandat 2930.651 kb on - strandat 2930.760 kb on + strandat 2930.761 kb on - strandat 2930.846 kb on - strandat 2930.918 kb on + strandat 2930.918 kb on + strandat 2930.919 kb on - strandat 2930.919 kb on - strandat 2930.965 kb on - strandat 2931.010 kb on + strandat 2931.030 kb on + strandat 2931.105 kb on - strandat 2931.105 kb on - strandat 2931.105 kb on - strandat 2931.109 kb on - strandat 2931.109 kb on - strandat 2931.216 kb on + strandat 2931.236 kb on + strandat 2931.236 kb on + strandat 2931.288 kb on - strandat 2931.288 kb on - strandat 2931.415 kb on + strand, within IAI46_13775at 2931.476 kb on + strand, within IAI46_13775at 2931.505 kb on + strand, within IAI46_13775at 2931.544 kb on + strand, within IAI46_13775at 2931.545 kb on - strand, within IAI46_13775at 2931.572 kb on + strand, within IAI46_13775at 2931.573 kb on - strand, within IAI46_13775at 2931.684 kb on - strand, within IAI46_13775at 2931.740 kb on + strand, within IAI46_13775at 2931.772 kb on + strand, within IAI46_13775at 2931.872 kb on + strand, within IAI46_13775at 2931.910 kb on + strand, within IAI46_13775at 2931.994 kb on + strandat 2931.994 kb on + strandat 2932.014 kb on + strandat 2932.103 kb on - strand, within IAI46_13780at 2932.253 kb on + strand, within IAI46_13780at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.718 kb on + strand, within IAI46_13785at 2932.854 kb on + strand, within IAI46_13785

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,930,294 + -0.8
2,930,510 + -0.5
2,930,604 + +1.4
2,930,604 + +1.1
2,930,649 - -0.0
2,930,650 + -0.1
2,930,651 - +0.6
2,930,760 + +0.3
2,930,761 - -0.0
2,930,846 - +0.4
2,930,918 + +0.5
2,930,918 + +0.2
2,930,919 - +0.6
2,930,919 - +0.3
2,930,965 - +0.4
2,931,010 + +0.3
2,931,030 + -0.7
2,931,105 - -0.5
2,931,105 - -2.8
2,931,105 - -0.0
2,931,109 - -0.4
2,931,109 - -1.5
2,931,216 + +1.5
2,931,236 + -0.0
2,931,236 + -0.9
2,931,288 - -0.0
2,931,288 - +0.1
2,931,415 + IAI46_13775 0.23 -0.3
2,931,476 + IAI46_13775 0.30 -0.0
2,931,505 + IAI46_13775 0.34 +1.0
2,931,544 + IAI46_13775 0.38 +0.4
2,931,545 - IAI46_13775 0.38 +1.0
2,931,572 + IAI46_13775 0.42 -0.6
2,931,573 - IAI46_13775 0.42 +1.0
2,931,684 - IAI46_13775 0.55 -0.0
2,931,740 + IAI46_13775 0.61 +0.5
2,931,772 + IAI46_13775 0.65 +0.5
2,931,872 + IAI46_13775 0.77 -0.8
2,931,910 + IAI46_13775 0.82 -0.8
2,931,994 + -1.5
2,931,994 + +0.3
2,932,014 + +0.1
2,932,103 - IAI46_13780 0.13 +0.8
2,932,253 + IAI46_13780 0.47 +0.3
2,932,718 + IAI46_13785 0.26 -0.4
2,932,718 + IAI46_13785 0.26 -0.4
2,932,718 + IAI46_13785 0.26 -0.5
2,932,718 + IAI46_13785 0.26 -0.0
2,932,718 + IAI46_13785 0.26 -0.1
2,932,718 + IAI46_13785 0.26 +0.5
2,932,854 + IAI46_13785 0.41 -1.2

Or see this region's nucleotide sequence