Strain Fitness in Serratia liquefaciens MT49 around IAI46_13550

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13545 and IAI46_13550 are separated by 427 nucleotidesIAI46_13550 and IAI46_13555 are separated by 3 nucleotides IAI46_13545: IAI46_13545 - peptide ABC transporter ATP-binding protein SapF, at 2,892,204 to 2,893,016 _13545 IAI46_13550: IAI46_13550 - peroxidase-related enzyme, at 2,893,444 to 2,894,631 _13550 IAI46_13555: IAI46_13555 - LysR family transcriptional regulator, at 2,894,635 to 2,895,531 _13555 Position (kb) 2893 2894 2895Strain fitness (log2 ratio) -2 -1 0 1at 2892.914 kb on - strand, within IAI46_13545at 2892.978 kb on - strandat 2893.120 kb on - strandat 2893.120 kb on - strandat 2893.121 kb on + strandat 2893.451 kb on + strandat 2893.451 kb on + strandat 2893.451 kb on + strandat 2893.454 kb on + strandat 2893.454 kb on + strandat 2893.467 kb on + strandat 2893.467 kb on + strandat 2893.467 kb on + strandat 2893.468 kb on - strandat 2893.468 kb on - strandat 2893.468 kb on - strandat 2893.607 kb on + strand, within IAI46_13550at 2893.624 kb on - strand, within IAI46_13550at 2893.843 kb on + strand, within IAI46_13550at 2894.182 kb on + strand, within IAI46_13550at 2894.183 kb on - strand, within IAI46_13550at 2894.185 kb on + strand, within IAI46_13550at 2894.185 kb on + strand, within IAI46_13550at 2894.186 kb on - strand, within IAI46_13550at 2894.244 kb on + strand, within IAI46_13550at 2894.245 kb on - strand, within IAI46_13550at 2894.388 kb on + strand, within IAI46_13550at 2894.563 kb on + strandat 2894.747 kb on - strand, within IAI46_13555at 2894.924 kb on + strand, within IAI46_13555at 2894.931 kb on + strand, within IAI46_13555at 2895.113 kb on - strand, within IAI46_13555at 2895.206 kb on - strand, within IAI46_13555at 2895.392 kb on - strand, within IAI46_13555at 2895.524 kb on - strandat 2895.590 kb on + strandat 2895.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,892,914 - IAI46_13545 0.87 +1.3
2,892,978 - +0.5
2,893,120 - -0.8
2,893,120 - -0.2
2,893,121 + -0.2
2,893,451 + -1.1
2,893,451 + +0.5
2,893,451 + -0.1
2,893,454 + +1.3
2,893,454 + +0.9
2,893,467 + +0.7
2,893,467 + -1.3
2,893,467 + +1.5
2,893,468 - -0.5
2,893,468 - +0.5
2,893,468 - -0.8
2,893,607 + IAI46_13550 0.14 -0.1
2,893,624 - IAI46_13550 0.15 -0.2
2,893,843 + IAI46_13550 0.34 -0.5
2,894,182 + IAI46_13550 0.62 -0.1
2,894,183 - IAI46_13550 0.62 +0.9
2,894,185 + IAI46_13550 0.62 -0.5
2,894,185 + IAI46_13550 0.62 +1.2
2,894,186 - IAI46_13550 0.62 -1.8
2,894,244 + IAI46_13550 0.67 +0.2
2,894,245 - IAI46_13550 0.67 -0.2
2,894,388 + IAI46_13550 0.79 -0.2
2,894,563 + +0.8
2,894,747 - IAI46_13555 0.12 -1.0
2,894,924 + IAI46_13555 0.32 -0.2
2,894,931 + IAI46_13555 0.33 +1.1
2,895,113 - IAI46_13555 0.53 +0.5
2,895,206 - IAI46_13555 0.64 +0.8
2,895,392 - IAI46_13555 0.84 +0.9
2,895,524 - -0.5
2,895,590 + +0.7
2,895,603 - +1.7

Or see this region's nucleotide sequence