Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13545 and IAI46_13550 are separated by 427 nucleotides IAI46_13550 and IAI46_13555 are separated by 3 nucleotides
IAI46_13545: IAI46_13545 - peptide ABC transporter ATP-binding protein SapF, at 2,892,204 to 2,893,016
_13545
IAI46_13550: IAI46_13550 - peroxidase-related enzyme, at 2,893,444 to 2,894,631
_13550
IAI46_13555: IAI46_13555 - LysR family transcriptional regulator, at 2,894,635 to 2,895,531
_13555
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1 at 2892.914 kb on - strand, within IAI46_13545 at 2892.978 kb on - strand at 2893.120 kb on - strand at 2893.120 kb on - strand at 2893.121 kb on + strand at 2893.451 kb on + strand at 2893.451 kb on + strand at 2893.451 kb on + strand at 2893.454 kb on + strand at 2893.454 kb on + strand at 2893.467 kb on + strand at 2893.467 kb on + strand at 2893.467 kb on + strand at 2893.468 kb on - strand at 2893.468 kb on - strand at 2893.468 kb on - strand at 2893.607 kb on + strand, within IAI46_13550 at 2893.624 kb on - strand, within IAI46_13550 at 2893.843 kb on + strand, within IAI46_13550 at 2894.182 kb on + strand, within IAI46_13550 at 2894.183 kb on - strand, within IAI46_13550 at 2894.185 kb on + strand, within IAI46_13550 at 2894.185 kb on + strand, within IAI46_13550 at 2894.186 kb on - strand, within IAI46_13550 at 2894.244 kb on + strand, within IAI46_13550 at 2894.245 kb on - strand, within IAI46_13550 at 2894.388 kb on + strand, within IAI46_13550 at 2894.563 kb on + strand at 2894.747 kb on - strand, within IAI46_13555 at 2894.924 kb on + strand, within IAI46_13555 at 2894.931 kb on + strand, within IAI46_13555 at 2895.113 kb on - strand, within IAI46_13555 at 2895.206 kb on - strand, within IAI46_13555 at 2895.392 kb on - strand, within IAI46_13555 at 2895.524 kb on - strand at 2895.590 kb on + strand at 2895.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 2,892,914 - IAI46_13545 0.87 +1.3 2,892,978 - +0.5 2,893,120 - -0.8 2,893,120 - -0.2 2,893,121 + -0.2 2,893,451 + -1.1 2,893,451 + +0.5 2,893,451 + -0.1 2,893,454 + +1.3 2,893,454 + +0.9 2,893,467 + +0.7 2,893,467 + -1.3 2,893,467 + +1.5 2,893,468 - -0.5 2,893,468 - +0.5 2,893,468 - -0.8 2,893,607 + IAI46_13550 0.14 -0.1 2,893,624 - IAI46_13550 0.15 -0.2 2,893,843 + IAI46_13550 0.34 -0.5 2,894,182 + IAI46_13550 0.62 -0.1 2,894,183 - IAI46_13550 0.62 +0.9 2,894,185 + IAI46_13550 0.62 -0.5 2,894,185 + IAI46_13550 0.62 +1.2 2,894,186 - IAI46_13550 0.62 -1.8 2,894,244 + IAI46_13550 0.67 +0.2 2,894,245 - IAI46_13550 0.67 -0.2 2,894,388 + IAI46_13550 0.79 -0.2 2,894,563 + +0.8 2,894,747 - IAI46_13555 0.12 -1.0 2,894,924 + IAI46_13555 0.32 -0.2 2,894,931 + IAI46_13555 0.33 +1.1 2,895,113 - IAI46_13555 0.53 +0.5 2,895,206 - IAI46_13555 0.64 +0.8 2,895,392 - IAI46_13555 0.84 +0.9 2,895,524 - -0.5 2,895,590 + +0.7 2,895,603 - +1.7
Or see this region's nucleotide sequence