Strain Fitness in Serratia liquefaciens MT49 around IAI46_13370

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13360 and IAI46_13365 are separated by 43 nucleotidesIAI46_13365 and IAI46_13370 are separated by 471 nucleotidesIAI46_13370 and IAI46_13375 are separated by 248 nucleotides IAI46_13360: IAI46_13360 - heat shock protein HslJ, at 2,852,093 to 2,852,521 _13360 IAI46_13365: IAI46_13365 - DUF333 domain-containing protein, at 2,852,565 to 2,852,825 _13365 IAI46_13370: IAI46_13370 - QacE family quaternary ammonium compound efflux SMR transporter, at 2,853,297 to 2,853,629 _13370 IAI46_13375: IAI46_13375 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,853,878 to 2,857,411 _13375 Position (kb) 2853 2854Strain fitness (log2 ratio) -3 -2 -1 0 1at 2852.498 kb on - strandat 2852.514 kb on + strandat 2852.791 kb on - strand, within IAI46_13365at 2852.827 kb on - strandat 2852.891 kb on + strandat 2852.946 kb on + strandat 2852.949 kb on - strandat 2853.209 kb on - strandat 2853.402 kb on + strand, within IAI46_13370at 2853.505 kb on - strand, within IAI46_13370at 2853.645 kb on - strandat 2853.725 kb on + strandat 2853.726 kb on - strandat 2853.767 kb on - strandat 2853.800 kb on + strandat 2853.800 kb on + strandat 2853.801 kb on - strandat 2853.801 kb on - strandat 2853.801 kb on - strandat 2854.078 kb on - strandat 2854.118 kb on - strandat 2854.539 kb on - strand, within IAI46_13375at 2854.571 kb on + strand, within IAI46_13375at 2854.572 kb on - strand, within IAI46_13375at 2854.574 kb on - strand, within IAI46_13375

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,852,498 - +0.6
2,852,514 + -0.6
2,852,791 - IAI46_13365 0.87 -1.6
2,852,827 - +0.5
2,852,891 + -2.3
2,852,946 + +0.6
2,852,949 - +0.1
2,853,209 - -0.2
2,853,402 + IAI46_13370 0.32 +0.1
2,853,505 - IAI46_13370 0.62 -0.2
2,853,645 - +0.5
2,853,725 + -0.3
2,853,726 - +0.8
2,853,767 - -0.9
2,853,800 + +0.2
2,853,800 + -1.0
2,853,801 - -2.9
2,853,801 - +0.4
2,853,801 - -0.2
2,854,078 - +0.1
2,854,118 - +0.6
2,854,539 - IAI46_13375 0.19 +1.3
2,854,571 + IAI46_13375 0.20 -0.6
2,854,572 - IAI46_13375 0.20 -0.8
2,854,574 - IAI46_13375 0.20 +1.1

Or see this region's nucleotide sequence