Strain Fitness in Serratia liquefaciens MT49 around IAI46_13130

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13115 and IAI46_13120 are separated by 88 nucleotidesIAI46_13120 and IAI46_13125 are separated by 3 nucleotidesIAI46_13125 and IAI46_13130 are separated by 0 nucleotidesIAI46_13130 and IAI46_13135 are separated by 204 nucleotides IAI46_13115: IAI46_13115 - Zn-dependent hydrolase, at 2,798,188 to 2,799,414 _13115 IAI46_13120: IAI46_13120 - helix-turn-helix transcriptional regulator, at 2,799,503 to 2,799,850 _13120 IAI46_13125: IAI46_13125 - SRPBCC family protein, at 2,799,854 to 2,800,387 _13125 IAI46_13130: IAI46_13130 - transporter, at 2,800,388 to 2,801,416 _13130 IAI46_13135: IAI46_13135 - inorganic phosphate transporter, at 2,801,621 to 2,803,231 _13135 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -2 -1 0 1 2at 2799.474 kb on - strandat 2799.492 kb on + strandat 2799.716 kb on - strand, within IAI46_13120at 2799.716 kb on - strand, within IAI46_13120at 2799.770 kb on + strand, within IAI46_13120at 2799.811 kb on - strand, within IAI46_13120at 2799.874 kb on + strandat 2799.874 kb on + strandat 2799.875 kb on - strandat 2799.875 kb on - strandat 2800.012 kb on - strand, within IAI46_13125at 2800.070 kb on + strand, within IAI46_13125at 2800.071 kb on - strand, within IAI46_13125at 2800.072 kb on + strand, within IAI46_13125at 2800.080 kb on + strand, within IAI46_13125at 2800.285 kb on + strand, within IAI46_13125at 2800.572 kb on + strand, within IAI46_13130at 2800.579 kb on + strand, within IAI46_13130at 2800.610 kb on + strand, within IAI46_13130at 2800.611 kb on - strand, within IAI46_13130at 2800.798 kb on + strand, within IAI46_13130at 2800.876 kb on - strand, within IAI46_13130at 2801.046 kb on + strand, within IAI46_13130at 2801.055 kb on - strand, within IAI46_13130at 2801.139 kb on - strand, within IAI46_13130at 2801.350 kb on - strandat 2801.416 kb on + strandat 2801.469 kb on + strandat 2801.521 kb on + strandat 2801.524 kb on + strandat 2801.576 kb on - strandat 2801.576 kb on - strandat 2801.595 kb on - strandat 2801.621 kb on - strandat 2801.755 kb on - strandat 2801.765 kb on - strandat 2801.801 kb on + strand, within IAI46_13135at 2801.903 kb on + strand, within IAI46_13135at 2802.147 kb on + strand, within IAI46_13135at 2802.276 kb on + strand, within IAI46_13135at 2802.332 kb on + strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,799,474 - +0.1
2,799,492 + +0.7
2,799,716 - IAI46_13120 0.61 -1.0
2,799,716 - IAI46_13120 0.61 +1.4
2,799,770 + IAI46_13120 0.77 -0.1
2,799,811 - IAI46_13120 0.89 +0.1
2,799,874 + -0.7
2,799,874 + +0.5
2,799,875 - +0.1
2,799,875 - +1.0
2,800,012 - IAI46_13125 0.30 -0.8
2,800,070 + IAI46_13125 0.40 +0.1
2,800,071 - IAI46_13125 0.41 +1.1
2,800,072 + IAI46_13125 0.41 +0.3
2,800,080 + IAI46_13125 0.42 +0.2
2,800,285 + IAI46_13125 0.81 +1.1
2,800,572 + IAI46_13130 0.18 -1.2
2,800,579 + IAI46_13130 0.19 +0.2
2,800,610 + IAI46_13130 0.22 +1.9
2,800,611 - IAI46_13130 0.22 -0.6
2,800,798 + IAI46_13130 0.40 +0.3
2,800,876 - IAI46_13130 0.47 -0.7
2,801,046 + IAI46_13130 0.64 +0.8
2,801,055 - IAI46_13130 0.65 -0.2
2,801,139 - IAI46_13130 0.73 -0.1
2,801,350 - -0.9
2,801,416 + -0.5
2,801,469 + +0.5
2,801,521 + -0.5
2,801,524 + -0.4
2,801,576 - -0.1
2,801,576 - -0.1
2,801,595 - -0.8
2,801,621 - -0.1
2,801,755 - -1.2
2,801,765 - -0.7
2,801,801 + IAI46_13135 0.11 +0.5
2,801,903 + IAI46_13135 0.18 +0.5
2,802,147 + IAI46_13135 0.33 -2.0
2,802,276 + IAI46_13135 0.41 +0.7
2,802,332 + IAI46_13135 0.44 +0.8
2,802,333 - IAI46_13135 0.44 +0.7
2,802,333 - IAI46_13135 0.44 -0.8
2,802,333 - IAI46_13135 0.44 -1.3

Or see this region's nucleotide sequence