Strain Fitness in Serratia liquefaciens MT49 around IAI46_12515

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12505 and IAI46_12510 overlap by 4 nucleotidesIAI46_12510 and IAI46_12515 overlap by 4 nucleotidesIAI46_12515 and IAI46_12520 are separated by 12 nucleotides IAI46_12505: IAI46_12505 - formate hydrogenlyase maturation HycH family protein, at 2,659,290 to 2,659,706 _12505 IAI46_12510: IAI46_12510 - NADH-quinone oxidoreductase subunit B family protein, at 2,659,703 to 2,660,500 _12510 IAI46_12515: IAI46_12515 - 4Fe-4S dicluster domain-containing protein, at 2,660,497 to 2,661,042 _12515 IAI46_12520: IAI46_12520 - hydrogenase large subunit, at 2,661,055 to 2,662,758 _12520 Position (kb) 2660 2661 2662Strain fitness (log2 ratio) -2 -1 0 1at 2659.612 kb on + strand, within IAI46_12505at 2659.613 kb on - strand, within IAI46_12505at 2659.613 kb on - strand, within IAI46_12505at 2660.076 kb on + strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.077 kb on - strand, within IAI46_12510at 2660.180 kb on - strand, within IAI46_12510at 2660.539 kb on - strandat 2660.649 kb on - strand, within IAI46_12515at 2660.736 kb on + strand, within IAI46_12515at 2660.920 kb on + strand, within IAI46_12515at 2661.028 kb on - strandat 2661.133 kb on + strandat 2661.167 kb on + strandat 2661.167 kb on + strandat 2661.213 kb on + strandat 2661.213 kb on + strandat 2661.230 kb on + strand, within IAI46_12520at 2661.231 kb on - strand, within IAI46_12520at 2661.479 kb on + strand, within IAI46_12520at 2661.603 kb on - strand, within IAI46_12520at 2661.666 kb on + strand, within IAI46_12520at 2661.788 kb on + strand, within IAI46_12520at 2661.858 kb on + strand, within IAI46_12520at 2661.858 kb on + strand, within IAI46_12520at 2662.008 kb on - strand, within IAI46_12520

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,659,612 + IAI46_12505 0.77 +1.1
2,659,613 - IAI46_12505 0.77 -0.8
2,659,613 - IAI46_12505 0.77 -0.5
2,660,076 + IAI46_12510 0.47 +0.3
2,660,077 - IAI46_12510 0.47 -0.3
2,660,077 - IAI46_12510 0.47 +0.2
2,660,077 - IAI46_12510 0.47 -0.5
2,660,180 - IAI46_12510 0.60 -0.6
2,660,539 - +0.5
2,660,649 - IAI46_12515 0.28 -1.3
2,660,736 + IAI46_12515 0.44 -1.1
2,660,920 + IAI46_12515 0.77 +0.6
2,661,028 - -0.7
2,661,133 + +0.7
2,661,167 + +0.5
2,661,167 + +0.6
2,661,213 + -0.9
2,661,213 + -0.2
2,661,230 + IAI46_12520 0.10 +1.0
2,661,231 - IAI46_12520 0.10 -1.5
2,661,479 + IAI46_12520 0.25 -2.0
2,661,603 - IAI46_12520 0.32 +0.2
2,661,666 + IAI46_12520 0.36 -1.8
2,661,788 + IAI46_12520 0.43 +0.1
2,661,858 + IAI46_12520 0.47 +0.8
2,661,858 + IAI46_12520 0.47 -0.3
2,662,008 - IAI46_12520 0.56 +0.7

Or see this region's nucleotide sequence