Strain Fitness in Serratia liquefaciens MT49 around IAI46_12445

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12435 and IAI46_12440 are separated by 24 nucleotidesIAI46_12440 and IAI46_12445 overlap by 8 nucleotidesIAI46_12445 and IAI46_12450 are separated by 169 nucleotidesIAI46_12450 and IAI46_12455 are separated by 24 nucleotides IAI46_12435: IAI46_12435 - FAD-dependent monooxygenase, at 2,641,803 to 2,643,515 _12435 IAI46_12440: IAI46_12440 - polysaccharide deacetylase family protein, at 2,643,540 to 2,644,196 _12440 IAI46_12445: IAI46_12445 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,644,189 to 2,645,811 _12445 IAI46_12450: IAI46_12450 - SDR family oxidoreductase, at 2,645,981 to 2,646,760 _12450 IAI46_12455: IAI46_12455 - FCD domain-containing protein, at 2,646,785 to 2,647,525 _12455 Position (kb) 2644 2645 2646Strain fitness (log2 ratio) -2 -1 0 1 2at 2643.321 kb on + strand, within IAI46_12435at 2643.322 kb on - strand, within IAI46_12435at 2643.472 kb on + strandat 2643.473 kb on - strandat 2643.919 kb on + strand, within IAI46_12440at 2643.920 kb on - strand, within IAI46_12440at 2644.047 kb on - strand, within IAI46_12440at 2644.255 kb on - strandat 2644.269 kb on + strandat 2644.403 kb on + strand, within IAI46_12445at 2644.575 kb on + strand, within IAI46_12445at 2644.577 kb on + strand, within IAI46_12445at 2644.577 kb on + strand, within IAI46_12445at 2644.578 kb on - strand, within IAI46_12445at 2644.672 kb on + strand, within IAI46_12445at 2645.106 kb on + strand, within IAI46_12445at 2645.110 kb on + strand, within IAI46_12445at 2645.248 kb on - strand, within IAI46_12445at 2645.306 kb on + strand, within IAI46_12445at 2645.442 kb on - strand, within IAI46_12445at 2645.525 kb on + strand, within IAI46_12445at 2645.622 kb on - strand, within IAI46_12445at 2645.787 kb on - strandat 2645.925 kb on + strandat 2645.925 kb on + strandat 2646.016 kb on - strandat 2646.177 kb on + strand, within IAI46_12450at 2646.177 kb on + strand, within IAI46_12450at 2646.242 kb on - strand, within IAI46_12450at 2646.245 kb on - strand, within IAI46_12450at 2646.706 kb on + strandat 2646.756 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,643,321 + IAI46_12435 0.89 +2.0
2,643,322 - IAI46_12435 0.89 +0.1
2,643,472 + -1.4
2,643,473 - +1.1
2,643,919 + IAI46_12440 0.58 -0.5
2,643,920 - IAI46_12440 0.58 -0.6
2,644,047 - IAI46_12440 0.77 +0.2
2,644,255 - -1.5
2,644,269 + -0.2
2,644,403 + IAI46_12445 0.13 +0.2
2,644,575 + IAI46_12445 0.24 +0.3
2,644,577 + IAI46_12445 0.24 -0.7
2,644,577 + IAI46_12445 0.24 +0.6
2,644,578 - IAI46_12445 0.24 -0.5
2,644,672 + IAI46_12445 0.30 -2.0
2,645,106 + IAI46_12445 0.57 -0.0
2,645,110 + IAI46_12445 0.57 +0.3
2,645,248 - IAI46_12445 0.65 -0.7
2,645,306 + IAI46_12445 0.69 +1.2
2,645,442 - IAI46_12445 0.77 +0.2
2,645,525 + IAI46_12445 0.82 +0.5
2,645,622 - IAI46_12445 0.88 -0.2
2,645,787 - +0.5
2,645,925 + +1.1
2,645,925 + +0.2
2,646,016 - -0.3
2,646,177 + IAI46_12450 0.25 +0.2
2,646,177 + IAI46_12450 0.25 -0.5
2,646,242 - IAI46_12450 0.33 +0.8
2,646,245 - IAI46_12450 0.34 +1.4
2,646,706 + +0.6
2,646,756 + -1.1

Or see this region's nucleotide sequence