Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12375 and IAI46_12380 are separated by 48 nucleotides IAI46_12380 and IAI46_12385 overlap by 23 nucleotides IAI46_12385 and IAI46_12390 are separated by 133 nucleotides
IAI46_12375: IAI46_12375 - alpha/beta fold hydrolase, at 2,628,616 to 2,629,680
_12375
IAI46_12380: IAI46_12380 - carboxymuconolactone decarboxylase family protein, at 2,629,729 to 2,630,493
_12380
IAI46_12385: IAI46_12385 - cupin domain-containing protein, at 2,630,471 to 2,630,950
_12385
IAI46_12390: IAI46_12390 - heavy metal response regulator transcription factor, at 2,631,084 to 2,631,761
_12390
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2628.925 kb on - strand, within IAI46_12375 at 2628.952 kb on + strand, within IAI46_12375 at 2629.175 kb on - strand, within IAI46_12375 at 2629.185 kb on + strand, within IAI46_12375 at 2629.186 kb on - strand, within IAI46_12375 at 2629.334 kb on + strand, within IAI46_12375 at 2629.335 kb on - strand, within IAI46_12375 at 2629.500 kb on - strand, within IAI46_12375 at 2629.500 kb on - strand, within IAI46_12375 at 2629.615 kb on - strand at 2629.670 kb on - strand at 2629.699 kb on + strand at 2629.847 kb on - strand, within IAI46_12380 at 2629.867 kb on - strand, within IAI46_12380 at 2629.976 kb on - strand, within IAI46_12380 at 2630.304 kb on + strand, within IAI46_12380 at 2630.635 kb on + strand, within IAI46_12385 at 2630.765 kb on - strand, within IAI46_12385 at 2630.908 kb on + strand at 2630.909 kb on - strand at 2630.909 kb on - strand at 2630.945 kb on + strand at 2630.951 kb on - strand at 2630.959 kb on - strand at 2631.104 kb on + strand at 2631.105 kb on - strand at 2631.305 kb on + strand, within IAI46_12390 at 2631.323 kb on + strand, within IAI46_12390 at 2631.359 kb on + strand, within IAI46_12390 at 2631.386 kb on + strand, within IAI46_12390 at 2631.390 kb on - strand, within IAI46_12390 at 2631.420 kb on + strand, within IAI46_12390 at 2631.472 kb on + strand, within IAI46_12390
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 2,628,925 - IAI46_12375 0.29 +0.8 2,628,952 + IAI46_12375 0.32 -0.2 2,629,175 - IAI46_12375 0.52 -2.2 2,629,185 + IAI46_12375 0.53 +2.1 2,629,186 - IAI46_12375 0.54 -0.6 2,629,334 + IAI46_12375 0.67 -0.1 2,629,335 - IAI46_12375 0.68 +0.2 2,629,500 - IAI46_12375 0.83 +2.0 2,629,500 - IAI46_12375 0.83 +0.2 2,629,615 - -0.5 2,629,670 - +1.9 2,629,699 + +0.2 2,629,847 - IAI46_12380 0.15 -0.6 2,629,867 - IAI46_12380 0.18 +0.9 2,629,976 - IAI46_12380 0.32 -2.3 2,630,304 + IAI46_12380 0.75 -0.1 2,630,635 + IAI46_12385 0.34 +0.5 2,630,765 - IAI46_12385 0.61 -1.2 2,630,908 + +1.1 2,630,909 - +0.0 2,630,909 - -0.3 2,630,945 + +0.1 2,630,951 - -0.5 2,630,959 - +2.0 2,631,104 + -0.8 2,631,105 - -1.5 2,631,305 + IAI46_12390 0.33 +0.2 2,631,323 + IAI46_12390 0.35 -0.8 2,631,359 + IAI46_12390 0.41 +0.6 2,631,386 + IAI46_12390 0.45 -0.7 2,631,390 - IAI46_12390 0.45 +0.5 2,631,420 + IAI46_12390 0.50 -0.8 2,631,472 + IAI46_12390 0.57 -0.4
Or see this region's nucleotide sequence