Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12075 and IAI46_12080 are separated by 44 nucleotides IAI46_12080 and IAI46_12085 overlap by 4 nucleotides IAI46_12085 and IAI46_12090 overlap by 4 nucleotides IAI46_12090 and IAI46_12095 are separated by 16 nucleotides
IAI46_12075: IAI46_12075 - multidrug efflux pump-associated protein, AcrZ family, at 2,555,934 to 2,556,068
_12075
IAI46_12080: IAI46_12080 - amino acid ABC transporter ATP-binding protein, at 2,556,113 to 2,556,874
_12080
IAI46_12085: IAI46_12085 - amino acid ABC transporter permease, at 2,556,871 to 2,557,788
_12085
IAI46_12090: IAI46_12090 - ABC transporter substrate-binding protein, at 2,557,785 to 2,558,699
_12090
IAI46_12095: IAI46_12095 - LLM class flavin-dependent oxidoreductase, at 2,558,716 to 2,560,053
_12095
Position (kb)
2556
2557
2558 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2555.948 kb on - strand, within IAI46_12075 at 2556.115 kb on - strand at 2556.152 kb on + strand at 2556.212 kb on - strand, within IAI46_12080 at 2556.363 kb on - strand, within IAI46_12080 at 2556.596 kb on - strand, within IAI46_12080 at 2556.642 kb on + strand, within IAI46_12080 at 2556.949 kb on - strand at 2556.963 kb on - strand, within IAI46_12085 at 2556.963 kb on - strand, within IAI46_12085 at 2556.974 kb on + strand, within IAI46_12085 at 2556.974 kb on + strand, within IAI46_12085 at 2556.975 kb on - strand, within IAI46_12085 at 2556.975 kb on - strand, within IAI46_12085 at 2556.978 kb on - strand, within IAI46_12085 at 2557.052 kb on + strand, within IAI46_12085 at 2557.053 kb on - strand, within IAI46_12085 at 2557.053 kb on - strand, within IAI46_12085 at 2557.053 kb on - strand, within IAI46_12085 at 2557.064 kb on + strand, within IAI46_12085 at 2557.064 kb on + strand, within IAI46_12085 at 2557.129 kb on - strand, within IAI46_12085 at 2557.280 kb on - strand, within IAI46_12085 at 2557.280 kb on - strand, within IAI46_12085 at 2557.480 kb on - strand, within IAI46_12085 at 2557.480 kb on - strand, within IAI46_12085 at 2557.481 kb on + strand, within IAI46_12085 at 2557.662 kb on + strand, within IAI46_12085 at 2557.663 kb on - strand, within IAI46_12085 at 2557.992 kb on - strand, within IAI46_12090 at 2558.023 kb on + strand, within IAI46_12090 at 2558.218 kb on + strand, within IAI46_12090 at 2558.342 kb on - strand, within IAI46_12090 at 2558.480 kb on - strand, within IAI46_12090 at 2558.499 kb on - strand, within IAI46_12090 at 2558.499 kb on - strand, within IAI46_12090 at 2558.525 kb on - strand, within IAI46_12090 at 2558.525 kb on - strand, within IAI46_12090 at 2558.538 kb on + strand, within IAI46_12090 at 2558.539 kb on - strand, within IAI46_12090 at 2558.624 kb on - strand at 2558.648 kb on + strand at 2558.648 kb on + strand at 2558.649 kb on - strand at 2558.674 kb on - strand at 2558.786 kb on + strand at 2558.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 2,555,948 - IAI46_12075 0.10 +0.0 2,556,115 - -0.4 2,556,152 + +0.3 2,556,212 - IAI46_12080 0.13 +1.8 2,556,363 - IAI46_12080 0.33 +0.3 2,556,596 - IAI46_12080 0.63 +0.8 2,556,642 + IAI46_12080 0.69 -2.6 2,556,949 - -1.5 2,556,963 - IAI46_12085 0.10 +0.5 2,556,963 - IAI46_12085 0.10 +1.6 2,556,974 + IAI46_12085 0.11 +0.1 2,556,974 + IAI46_12085 0.11 +0.9 2,556,975 - IAI46_12085 0.11 -1.5 2,556,975 - IAI46_12085 0.11 -0.3 2,556,978 - IAI46_12085 0.12 +0.7 2,557,052 + IAI46_12085 0.20 +0.5 2,557,053 - IAI46_12085 0.20 +0.1 2,557,053 - IAI46_12085 0.20 -0.1 2,557,053 - IAI46_12085 0.20 +0.9 2,557,064 + IAI46_12085 0.21 -1.1 2,557,064 + IAI46_12085 0.21 +1.3 2,557,129 - IAI46_12085 0.28 -0.3 2,557,280 - IAI46_12085 0.45 -0.1 2,557,280 - IAI46_12085 0.45 -0.2 2,557,480 - IAI46_12085 0.66 -0.5 2,557,480 - IAI46_12085 0.66 +0.5 2,557,481 + IAI46_12085 0.66 -1.3 2,557,662 + IAI46_12085 0.86 -0.8 2,557,663 - IAI46_12085 0.86 +0.3 2,557,992 - IAI46_12090 0.23 +0.4 2,558,023 + IAI46_12090 0.26 -0.5 2,558,218 + IAI46_12090 0.47 +0.7 2,558,342 - IAI46_12090 0.61 +0.8 2,558,480 - IAI46_12090 0.76 -1.1 2,558,499 - IAI46_12090 0.78 +1.2 2,558,499 - IAI46_12090 0.78 -2.9 2,558,525 - IAI46_12090 0.81 -0.4 2,558,525 - IAI46_12090 0.81 -1.2 2,558,538 + IAI46_12090 0.82 +1.2 2,558,539 - IAI46_12090 0.82 +0.2 2,558,624 - +0.5 2,558,648 + +0.2 2,558,648 + -1.2 2,558,649 - -1.3 2,558,674 - -1.3 2,558,786 + +0.2 2,558,787 - -1.1
Or see this region's nucleotide sequence