Strain Fitness in Serratia liquefaciens MT49 around IAI46_12070

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12065 and IAI46_12070 are separated by 283 nucleotidesIAI46_12070 and IAI46_12075 are separated by 502 nucleotidesIAI46_12075 and IAI46_12080 are separated by 44 nucleotides IAI46_12065: IAI46_12065 - peptidoglycan synthase, at 2,553,217 to 2,554,935 _12065 IAI46_12070: IAI46_12070 - osmotically-inducible lipoprotein OsmB, at 2,555,219 to 2,555,431 _12070 IAI46_12075: IAI46_12075 - multidrug efflux pump-associated protein, AcrZ family, at 2,555,934 to 2,556,068 _12075 IAI46_12080: IAI46_12080 - amino acid ABC transporter ATP-binding protein, at 2,556,113 to 2,556,874 _12080 Position (kb) 2555 2556Strain fitness (log2 ratio) -1 0 1 2at 2554.227 kb on - strand, within IAI46_12065at 2554.320 kb on - strand, within IAI46_12065at 2554.394 kb on - strand, within IAI46_12065at 2554.605 kb on + strand, within IAI46_12065at 2554.605 kb on + strand, within IAI46_12065at 2554.606 kb on - strand, within IAI46_12065at 2554.606 kb on - strand, within IAI46_12065at 2554.717 kb on + strand, within IAI46_12065at 2554.718 kb on - strand, within IAI46_12065at 2554.730 kb on - strand, within IAI46_12065at 2554.735 kb on - strand, within IAI46_12065at 2554.739 kb on - strand, within IAI46_12065at 2554.739 kb on - strand, within IAI46_12065at 2554.868 kb on + strandat 2554.868 kb on + strandat 2554.884 kb on + strandat 2554.884 kb on + strandat 2555.112 kb on - strandat 2555.359 kb on + strand, within IAI46_12070at 2555.399 kb on - strand, within IAI46_12070at 2555.422 kb on + strandat 2555.573 kb on - strandat 2555.807 kb on + strandat 2555.807 kb on + strandat 2555.948 kb on - strand, within IAI46_12075at 2556.115 kb on - strandat 2556.152 kb on + strandat 2556.212 kb on - strand, within IAI46_12080at 2556.363 kb on - strand, within IAI46_12080

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,554,227 - IAI46_12065 0.59 -1.1
2,554,320 - IAI46_12065 0.64 -1.2
2,554,394 - IAI46_12065 0.68 +1.8
2,554,605 + IAI46_12065 0.81 +0.1
2,554,605 + IAI46_12065 0.81 +0.3
2,554,606 - IAI46_12065 0.81 -0.1
2,554,606 - IAI46_12065 0.81 -0.1
2,554,717 + IAI46_12065 0.87 -1.5
2,554,718 - IAI46_12065 0.87 -0.2
2,554,730 - IAI46_12065 0.88 +0.8
2,554,735 - IAI46_12065 0.88 +0.5
2,554,739 - IAI46_12065 0.89 +1.3
2,554,739 - IAI46_12065 0.89 +0.7
2,554,868 + +0.9
2,554,868 + +1.4
2,554,884 + +0.4
2,554,884 + +0.3
2,555,112 - +1.7
2,555,359 + IAI46_12070 0.66 +1.5
2,555,399 - IAI46_12070 0.85 +0.4
2,555,422 + +0.1
2,555,573 - +1.3
2,555,807 + -0.1
2,555,807 + -0.8
2,555,948 - IAI46_12075 0.10 +0.0
2,556,115 - -0.4
2,556,152 + +0.3
2,556,212 - IAI46_12080 0.13 +1.8
2,556,363 - IAI46_12080 0.33 +0.3

Or see this region's nucleotide sequence