Strain Fitness in Serratia liquefaciens MT49 around IAI46_09485

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09470 and IAI46_09475 are separated by 53 nucleotidesIAI46_09475 and IAI46_09480 are separated by 11 nucleotidesIAI46_09480 and IAI46_09485 are separated by 42 nucleotidesIAI46_09485 and IAI46_09490 overlap by 1 nucleotidesIAI46_09490 and IAI46_09495 overlap by 1 nucleotides IAI46_09470: IAI46_09470 - hypothetical protein, at 2,010,668 to 2,011,651 _09470 IAI46_09475: IAI46_09475 - hypothetical protein, at 2,011,705 to 2,012,151 _09475 IAI46_09480: IAI46_09480 - hypothetical protein, at 2,012,163 to 2,012,453 _09480 IAI46_09485: IAI46_09485 - hypothetical protein, at 2,012,496 to 2,012,819 _09485 IAI46_09490: IAI46_09490 - hypothetical protein, at 2,012,819 to 2,013,427 _09490 IAI46_09495: IAI46_09495 - hypothetical protein, at 2,013,427 to 2,015,922 _09495 Position (kb) 2012 2013Strain fitness (log2 ratio) -1 0 1 2at 2011.609 kb on + strandat 2011.649 kb on + strandat 2011.725 kb on + strandat 2011.725 kb on + strandat 2011.726 kb on - strandat 2011.726 kb on - strandat 2011.768 kb on - strand, within IAI46_09475at 2011.793 kb on + strand, within IAI46_09475at 2011.793 kb on + strand, within IAI46_09475at 2011.794 kb on - strand, within IAI46_09475at 2011.794 kb on - strand, within IAI46_09475at 2011.794 kb on - strand, within IAI46_09475at 2011.795 kb on + strand, within IAI46_09475at 2011.795 kb on + strand, within IAI46_09475at 2011.795 kb on + strand, within IAI46_09475at 2011.796 kb on - strand, within IAI46_09475at 2011.979 kb on + strand, within IAI46_09475at 2012.044 kb on + strand, within IAI46_09475at 2012.045 kb on - strand, within IAI46_09475at 2012.045 kb on - strand, within IAI46_09475at 2012.182 kb on - strandat 2012.234 kb on + strand, within IAI46_09480at 2012.333 kb on + strand, within IAI46_09480at 2012.334 kb on - strand, within IAI46_09480at 2012.334 kb on - strand, within IAI46_09480at 2012.452 kb on - strandat 2012.533 kb on - strand, within IAI46_09485at 2012.654 kb on + strand, within IAI46_09485at 2012.654 kb on + strand, within IAI46_09485at 2012.655 kb on - strand, within IAI46_09485at 2012.983 kb on + strand, within IAI46_09490at 2013.033 kb on - strand, within IAI46_09490at 2013.033 kb on - strand, within IAI46_09490at 2013.034 kb on + strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.035 kb on - strand, within IAI46_09490at 2013.038 kb on + strand, within IAI46_09490at 2013.039 kb on - strand, within IAI46_09490at 2013.064 kb on + strand, within IAI46_09490at 2013.065 kb on - strand, within IAI46_09490at 2013.125 kb on + strand, within IAI46_09490at 2013.125 kb on + strand, within IAI46_09490at 2013.125 kb on + strand, within IAI46_09490at 2013.125 kb on + strand, within IAI46_09490at 2013.126 kb on - strand, within IAI46_09490at 2013.164 kb on - strand, within IAI46_09490at 2013.169 kb on + strand, within IAI46_09490at 2013.170 kb on - strand, within IAI46_09490at 2013.197 kb on + strand, within IAI46_09490at 2013.223 kb on + strand, within IAI46_09490at 2013.223 kb on + strand, within IAI46_09490at 2013.224 kb on - strand, within IAI46_09490at 2013.425 kb on + strandat 2013.425 kb on + strandat 2013.426 kb on - strandat 2013.426 kb on - strandat 2013.432 kb on + strandat 2013.433 kb on - strandat 2013.485 kb on - strandat 2013.586 kb on + strandat 2013.604 kb on + strandat 2013.659 kb on - strandat 2013.659 kb on - strandat 2013.659 kb on - strandat 2013.659 kb on - strandat 2013.659 kb on - strandat 2013.662 kb on + strandat 2013.663 kb on - strandat 2013.671 kb on + strandat 2013.672 kb on - strandat 2013.718 kb on + strand, within IAI46_09495at 2013.749 kb on + strand, within IAI46_09495

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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2,011,609 + -0.0
2,011,649 + +0.7
2,011,725 + +0.4
2,011,725 + +0.8
2,011,726 - +0.4
2,011,726 - +0.2
2,011,768 - IAI46_09475 0.14 -0.7
2,011,793 + IAI46_09475 0.20 -1.3
2,011,793 + IAI46_09475 0.20 +1.2
2,011,794 - IAI46_09475 0.20 -0.8
2,011,794 - IAI46_09475 0.20 +2.3
2,011,794 - IAI46_09475 0.20 +0.7
2,011,795 + IAI46_09475 0.20 +2.7
2,011,795 + IAI46_09475 0.20 -0.7
2,011,795 + IAI46_09475 0.20 -0.2
2,011,796 - IAI46_09475 0.20 +0.2
2,011,979 + IAI46_09475 0.61 +0.2
2,012,044 + IAI46_09475 0.76 -0.0
2,012,045 - IAI46_09475 0.76 +0.7
2,012,045 - IAI46_09475 0.76 +0.1
2,012,182 - +0.1
2,012,234 + IAI46_09480 0.24 -0.1
2,012,333 + IAI46_09480 0.58 +0.8
2,012,334 - IAI46_09480 0.59 +0.7
2,012,334 - IAI46_09480 0.59 -0.7
2,012,452 - -0.2
2,012,533 - IAI46_09485 0.11 +0.2
2,012,654 + IAI46_09485 0.49 +0.1
2,012,654 + IAI46_09485 0.49 +0.3
2,012,655 - IAI46_09485 0.49 -0.1
2,012,983 + IAI46_09490 0.27 +0.5
2,013,033 - IAI46_09490 0.35 +0.1
2,013,033 - IAI46_09490 0.35 +0.7
2,013,034 + IAI46_09490 0.35 +0.3
2,013,035 - IAI46_09490 0.35 -0.2
2,013,035 - IAI46_09490 0.35 -0.1
2,013,035 - IAI46_09490 0.35 +1.3
2,013,035 - IAI46_09490 0.35 -1.3
2,013,035 - IAI46_09490 0.35 +0.9
2,013,035 - IAI46_09490 0.35 -0.1
2,013,038 + IAI46_09490 0.36 +0.7
2,013,039 - IAI46_09490 0.36 -0.6
2,013,064 + IAI46_09490 0.40 +1.3
2,013,065 - IAI46_09490 0.40 -0.8
2,013,125 + IAI46_09490 0.50 +0.1
2,013,125 + IAI46_09490 0.50 -0.3
2,013,125 + IAI46_09490 0.50 -0.5
2,013,125 + IAI46_09490 0.50 -0.1
2,013,126 - IAI46_09490 0.50 +0.9
2,013,164 - IAI46_09490 0.57 +0.6
2,013,169 + IAI46_09490 0.57 -0.1
2,013,170 - IAI46_09490 0.58 -1.2
2,013,197 + IAI46_09490 0.62 -0.1
2,013,223 + IAI46_09490 0.66 -0.8
2,013,223 + IAI46_09490 0.66 +0.7
2,013,224 - IAI46_09490 0.67 +0.3
2,013,425 + -0.9
2,013,425 + +1.3
2,013,426 - -0.7
2,013,426 - +0.7
2,013,432 + -1.7
2,013,433 - -0.3
2,013,485 - +1.1
2,013,586 + +0.4
2,013,604 + -1.2
2,013,659 - -0.8
2,013,659 - +0.1
2,013,659 - +0.6
2,013,659 - -0.9
2,013,659 - -0.9
2,013,662 + +0.6
2,013,663 - -0.1
2,013,671 + -0.3
2,013,672 - -0.1
2,013,718 + IAI46_09495 0.12 +0.8
2,013,749 + IAI46_09495 0.13 +1.2

Or see this region's nucleotide sequence