Strain Fitness in Serratia liquefaciens MT49 around IAI46_09215

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09210 and IAI46_09215 are separated by 58 nucleotidesIAI46_09215 and IAI46_09220 are separated by 145 nucleotidesIAI46_09220 and IAI46_09225 are separated by 58 nucleotidesIAI46_09225 and IAI46_09230 are separated by 10 nucleotides IAI46_09210: IAI46_09210 - excinuclease ABC subunit UvrC, at 1,971,838 to 1,973,670 _09210 IAI46_09215: IAI46_09215 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,973,729 to 1,974,277 _09215 IAI46_09220: IAI46_09220 - tRNA-Gly, at 1,974,423 to 1,974,498 _09220 IAI46_09225: IAI46_09225 - tRNA-Cys, at 1,974,557 to 1,974,630 _09225 IAI46_09230: IAI46_09230 - tRNA-Leu, at 1,974,641 to 1,974,726 _09230 Position (kb) 1973 1974 1975Strain fitness (log2 ratio) -2 -1 0 1 2at 1972.747 kb on + strand, within IAI46_09210at 1972.747 kb on + strand, within IAI46_09210at 1972.751 kb on + strand, within IAI46_09210at 1972.790 kb on + strand, within IAI46_09210at 1972.898 kb on - strand, within IAI46_09210at 1972.903 kb on - strand, within IAI46_09210at 1972.903 kb on - strand, within IAI46_09210at 1972.914 kb on + strand, within IAI46_09210at 1973.078 kb on + strand, within IAI46_09210at 1973.119 kb on + strand, within IAI46_09210at 1973.121 kb on + strand, within IAI46_09210at 1973.122 kb on - strand, within IAI46_09210at 1973.122 kb on - strand, within IAI46_09210at 1973.122 kb on - strand, within IAI46_09210at 1973.124 kb on + strand, within IAI46_09210at 1973.152 kb on + strand, within IAI46_09210at 1973.152 kb on + strand, within IAI46_09210at 1973.153 kb on - strand, within IAI46_09210at 1973.223 kb on + strand, within IAI46_09210at 1973.224 kb on - strand, within IAI46_09210at 1973.224 kb on - strand, within IAI46_09210at 1973.270 kb on + strand, within IAI46_09210at 1973.270 kb on + strand, within IAI46_09210at 1973.493 kb on - strandat 1973.560 kb on + strandat 1973.561 kb on - strandat 1973.562 kb on + strandat 1973.563 kb on - strandat 1973.582 kb on + strandat 1973.687 kb on + strandat 1973.713 kb on + strandat 1973.714 kb on - strandat 1973.717 kb on + strandat 1973.728 kb on + strandat 1974.887 kb on + strandat 1974.888 kb on - strandat 1974.949 kb on - strandat 1974.957 kb on + strandat 1974.975 kb on + strandat 1974.975 kb on + strandat 1974.975 kb on + strandat 1974.979 kb on + strandat 1974.979 kb on + strandat 1975.029 kb on + strandat 1975.029 kb on + strandat 1975.030 kb on - strandat 1975.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,972,747 + IAI46_09210 0.50 -0.4
1,972,747 + IAI46_09210 0.50 -0.0
1,972,751 + IAI46_09210 0.50 -1.0
1,972,790 + IAI46_09210 0.52 -0.6
1,972,898 - IAI46_09210 0.58 -0.4
1,972,903 - IAI46_09210 0.58 -0.9
1,972,903 - IAI46_09210 0.58 -0.5
1,972,914 + IAI46_09210 0.59 -0.4
1,973,078 + IAI46_09210 0.68 -0.0
1,973,119 + IAI46_09210 0.70 +0.5
1,973,121 + IAI46_09210 0.70 +0.3
1,973,122 - IAI46_09210 0.70 +0.1
1,973,122 - IAI46_09210 0.70 +0.6
1,973,122 - IAI46_09210 0.70 -2.6
1,973,124 + IAI46_09210 0.70 +0.2
1,973,152 + IAI46_09210 0.72 -0.6
1,973,152 + IAI46_09210 0.72 +0.7
1,973,153 - IAI46_09210 0.72 +0.3
1,973,223 + IAI46_09210 0.76 +1.9
1,973,224 - IAI46_09210 0.76 -0.3
1,973,224 - IAI46_09210 0.76 +0.3
1,973,270 + IAI46_09210 0.78 +2.4
1,973,270 + IAI46_09210 0.78 +1.0
1,973,493 - +0.6
1,973,560 + +0.1
1,973,561 - -0.1
1,973,562 + +0.6
1,973,563 - -0.6
1,973,582 + -0.3
1,973,687 + -0.2
1,973,713 + +0.7
1,973,714 - +0.5
1,973,717 + -0.2
1,973,728 + +0.5
1,974,887 + +0.8
1,974,888 - +0.4
1,974,949 - -0.5
1,974,957 + +0.8
1,974,975 + -0.1
1,974,975 + +0.3
1,974,975 + -1.3
1,974,979 + +0.6
1,974,979 + +0.7
1,975,029 + -0.1
1,975,029 + +0.3
1,975,030 - -1.1
1,975,148 + +1.2

Or see this region's nucleotide sequence