Strain Fitness in Serratia liquefaciens MT49 around IAI46_08470

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08465 and IAI46_08470 are separated by 180 nucleotidesIAI46_08470 and IAI46_08475 are separated by 51 nucleotides IAI46_08465: IAI46_08465 - ubiquinone-dependent pyruvate dehydrogenase, at 1,799,270 to 1,800,991 _08465 IAI46_08470: IAI46_08470 - NADH oxidoreductase, at 1,801,172 to 1,802,176 _08470 IAI46_08475: IAI46_08475 - hydroxylamine reductase, at 1,802,228 to 1,803,877 _08475 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -1 0 1 2at 1800.253 kb on + strand, within IAI46_08465at 1800.254 kb on - strand, within IAI46_08465at 1800.255 kb on + strand, within IAI46_08465at 1800.274 kb on + strand, within IAI46_08465at 1800.383 kb on - strand, within IAI46_08465at 1800.397 kb on + strand, within IAI46_08465at 1800.660 kb on + strand, within IAI46_08465at 1800.689 kb on - strand, within IAI46_08465at 1800.713 kb on + strand, within IAI46_08465at 1800.714 kb on - strand, within IAI46_08465at 1800.905 kb on - strandat 1800.991 kb on + strandat 1800.991 kb on + strandat 1801.016 kb on - strandat 1801.056 kb on + strandat 1801.057 kb on - strandat 1801.063 kb on + strandat 1801.080 kb on + strandat 1801.108 kb on - strandat 1801.273 kb on - strand, within IAI46_08470at 1801.393 kb on - strand, within IAI46_08470at 1801.463 kb on - strand, within IAI46_08470at 1801.534 kb on + strand, within IAI46_08470at 1801.534 kb on + strand, within IAI46_08470at 1801.534 kb on + strand, within IAI46_08470at 1801.535 kb on - strand, within IAI46_08470at 1801.535 kb on - strand, within IAI46_08470at 1801.536 kb on + strand, within IAI46_08470at 1801.536 kb on + strand, within IAI46_08470at 1801.536 kb on + strand, within IAI46_08470at 1801.536 kb on + strand, within IAI46_08470at 1801.537 kb on - strand, within IAI46_08470at 1801.627 kb on - strand, within IAI46_08470at 1801.733 kb on + strand, within IAI46_08470at 1801.733 kb on + strand, within IAI46_08470at 1801.733 kb on + strand, within IAI46_08470at 1801.734 kb on - strand, within IAI46_08470at 1801.734 kb on - strand, within IAI46_08470at 1801.836 kb on + strand, within IAI46_08470at 1801.958 kb on + strand, within IAI46_08470at 1802.005 kb on + strand, within IAI46_08470at 1802.006 kb on - strand, within IAI46_08470at 1802.007 kb on + strand, within IAI46_08470at 1802.073 kb on + strand, within IAI46_08470at 1802.177 kb on - strandat 1802.177 kb on - strandat 1802.266 kb on + strandat 1802.446 kb on + strand, within IAI46_08475at 1802.638 kb on - strand, within IAI46_08475at 1802.924 kb on - strand, within IAI46_08475at 1802.947 kb on + strand, within IAI46_08475at 1802.947 kb on + strand, within IAI46_08475at 1803.000 kb on + strand, within IAI46_08475at 1803.072 kb on + strand, within IAI46_08475at 1803.072 kb on + strand, within IAI46_08475at 1803.073 kb on - strand, within IAI46_08475

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,800,253 + IAI46_08465 0.57 +1.6
1,800,254 - IAI46_08465 0.57 -0.3
1,800,255 + IAI46_08465 0.57 +0.2
1,800,274 + IAI46_08465 0.58 -0.5
1,800,383 - IAI46_08465 0.65 -0.8
1,800,397 + IAI46_08465 0.65 -0.4
1,800,660 + IAI46_08465 0.81 -1.2
1,800,689 - IAI46_08465 0.82 +0.2
1,800,713 + IAI46_08465 0.84 -0.2
1,800,714 - IAI46_08465 0.84 +0.1
1,800,905 - -0.1
1,800,991 + -0.7
1,800,991 + -0.5
1,801,016 - -0.6
1,801,056 + +1.0
1,801,057 - +1.6
1,801,063 + -0.6
1,801,080 + +1.0
1,801,108 - +0.3
1,801,273 - IAI46_08470 0.10 +1.8
1,801,393 - IAI46_08470 0.22 -0.4
1,801,463 - IAI46_08470 0.29 -0.8
1,801,534 + IAI46_08470 0.36 +0.8
1,801,534 + IAI46_08470 0.36 +0.1
1,801,534 + IAI46_08470 0.36 -0.3
1,801,535 - IAI46_08470 0.36 -0.0
1,801,535 - IAI46_08470 0.36 -0.4
1,801,536 + IAI46_08470 0.36 +0.5
1,801,536 + IAI46_08470 0.36 +1.1
1,801,536 + IAI46_08470 0.36 -0.8
1,801,536 + IAI46_08470 0.36 +0.5
1,801,537 - IAI46_08470 0.36 +0.4
1,801,627 - IAI46_08470 0.45 +0.5
1,801,733 + IAI46_08470 0.56 +0.4
1,801,733 + IAI46_08470 0.56 -0.2
1,801,733 + IAI46_08470 0.56 +0.5
1,801,734 - IAI46_08470 0.56 -0.2
1,801,734 - IAI46_08470 0.56 +0.9
1,801,836 + IAI46_08470 0.66 -0.1
1,801,958 + IAI46_08470 0.78 -0.5
1,802,005 + IAI46_08470 0.83 +0.8
1,802,006 - IAI46_08470 0.83 -0.0
1,802,007 + IAI46_08470 0.83 -0.0
1,802,073 + IAI46_08470 0.90 +1.1
1,802,177 - -0.4
1,802,177 - +0.4
1,802,266 + +0.5
1,802,446 + IAI46_08475 0.13 +1.6
1,802,638 - IAI46_08475 0.25 -0.5
1,802,924 - IAI46_08475 0.42 -0.5
1,802,947 + IAI46_08475 0.44 -0.2
1,802,947 + IAI46_08475 0.44 -1.0
1,803,000 + IAI46_08475 0.47 +0.3
1,803,072 + IAI46_08475 0.51 +0.0
1,803,072 + IAI46_08475 0.51 +0.1
1,803,073 - IAI46_08475 0.51 +0.5

Or see this region's nucleotide sequence