Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07600 and IAI46_07605 overlap by 4 nucleotides IAI46_07605 and IAI46_07610 are separated by 285 nucleotides
IAI46_07600: IAI46_07600 - four-carbon acid sugar kinase family protein, at 1,604,334 to 1,605,599
_07600
IAI46_07605: IAI46_07605 - NAD(P)-dependent oxidoreductase, at 1,605,596 to 1,606,510
_07605
IAI46_07610: IAI46_07610 - DeoR/GlpR transcriptional regulator, at 1,606,796 to 1,607,566
_07610
Position (kb)
1605
1606
1607 Strain fitness (log2 ratio)
-2
-1
0
1 at 1604.659 kb on + strand, within IAI46_07600 at 1604.659 kb on + strand, within IAI46_07600 at 1604.660 kb on - strand, within IAI46_07600 at 1604.660 kb on - strand, within IAI46_07600 at 1604.660 kb on - strand, within IAI46_07600 at 1604.698 kb on - strand, within IAI46_07600 at 1604.722 kb on + strand, within IAI46_07600 at 1604.722 kb on + strand, within IAI46_07600 at 1604.723 kb on - strand, within IAI46_07600 at 1605.002 kb on + strand, within IAI46_07600 at 1605.017 kb on - strand, within IAI46_07600 at 1605.218 kb on - strand, within IAI46_07600 at 1605.218 kb on - strand, within IAI46_07600 at 1605.218 kb on - strand, within IAI46_07600 at 1605.226 kb on + strand, within IAI46_07600 at 1605.352 kb on + strand, within IAI46_07600 at 1605.499 kb on - strand at 1605.507 kb on + strand at 1605.700 kb on + strand, within IAI46_07605 at 1605.700 kb on + strand, within IAI46_07605 at 1605.700 kb on + strand, within IAI46_07605 at 1605.704 kb on - strand, within IAI46_07605 at 1605.704 kb on - strand, within IAI46_07605 at 1605.832 kb on + strand, within IAI46_07605 at 1605.882 kb on + strand, within IAI46_07605 at 1605.883 kb on - strand, within IAI46_07605 at 1606.017 kb on + strand, within IAI46_07605 at 1606.017 kb on + strand, within IAI46_07605 at 1606.018 kb on - strand, within IAI46_07605 at 1606.178 kb on + strand, within IAI46_07605 at 1606.179 kb on - strand, within IAI46_07605 at 1606.179 kb on - strand, within IAI46_07605 at 1606.310 kb on + strand, within IAI46_07605 at 1606.311 kb on - strand, within IAI46_07605 at 1606.311 kb on - strand, within IAI46_07605 at 1606.413 kb on + strand, within IAI46_07605 at 1606.413 kb on + strand, within IAI46_07605 at 1606.413 kb on + strand, within IAI46_07605 at 1606.413 kb on + strand, within IAI46_07605 at 1606.413 kb on + strand, within IAI46_07605 at 1606.414 kb on - strand, within IAI46_07605 at 1606.476 kb on - strand at 1606.606 kb on - strand at 1606.627 kb on - strand at 1606.720 kb on - strand at 1606.800 kb on + strand at 1606.801 kb on - strand at 1606.806 kb on + strand at 1606.806 kb on + strand at 1606.807 kb on - strand at 1606.807 kb on - strand at 1606.894 kb on + strand, within IAI46_07610 at 1606.894 kb on + strand, within IAI46_07610 at 1606.895 kb on - strand, within IAI46_07610 at 1607.018 kb on + strand, within IAI46_07610 at 1607.018 kb on + strand, within IAI46_07610 at 1607.018 kb on + strand, within IAI46_07610 at 1607.018 kb on + strand, within IAI46_07610 at 1607.019 kb on - strand, within IAI46_07610 at 1607.019 kb on - strand, within IAI46_07610 at 1607.019 kb on - strand, within IAI46_07610 at 1607.104 kb on + strand, within IAI46_07610 at 1607.104 kb on + strand, within IAI46_07610 at 1607.188 kb on - strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.277 kb on + strand, within IAI46_07610 at 1607.305 kb on + strand, within IAI46_07610 at 1607.356 kb on + strand, within IAI46_07610 at 1607.402 kb on - strand, within IAI46_07610 at 1607.436 kb on + strand, within IAI46_07610 at 1607.436 kb on + strand, within IAI46_07610 at 1607.436 kb on + strand, within IAI46_07610 at 1607.437 kb on - strand, within IAI46_07610 at 1607.444 kb on + strand, within IAI46_07610 at 1607.444 kb on + strand, within IAI46_07610 at 1607.444 kb on + strand, within IAI46_07610 at 1607.479 kb on + strand, within IAI46_07610 at 1607.480 kb on - strand, within IAI46_07610 at 1607.480 kb on - strand, within IAI46_07610 at 1607.482 kb on + strand, within IAI46_07610
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 1,604,659 + IAI46_07600 0.26 -0.1 1,604,659 + IAI46_07600 0.26 +0.4 1,604,660 - IAI46_07600 0.26 -0.3 1,604,660 - IAI46_07600 0.26 +0.5 1,604,660 - IAI46_07600 0.26 -0.1 1,604,698 - IAI46_07600 0.29 +0.1 1,604,722 + IAI46_07600 0.31 +0.3 1,604,722 + IAI46_07600 0.31 +0.2 1,604,723 - IAI46_07600 0.31 -0.2 1,605,002 + IAI46_07600 0.53 +0.1 1,605,017 - IAI46_07600 0.54 -1.9 1,605,218 - IAI46_07600 0.70 +0.2 1,605,218 - IAI46_07600 0.70 -0.1 1,605,218 - IAI46_07600 0.70 -0.2 1,605,226 + IAI46_07600 0.70 +1.5 1,605,352 + IAI46_07600 0.80 +1.4 1,605,499 - +1.0 1,605,507 + -0.2 1,605,700 + IAI46_07605 0.11 -2.1 1,605,700 + IAI46_07605 0.11 -0.1 1,605,700 + IAI46_07605 0.11 +1.2 1,605,704 - IAI46_07605 0.12 -0.4 1,605,704 - IAI46_07605 0.12 +0.3 1,605,832 + IAI46_07605 0.26 +1.3 1,605,882 + IAI46_07605 0.31 +1.0 1,605,883 - IAI46_07605 0.31 -0.7 1,606,017 + IAI46_07605 0.46 +0.3 1,606,017 + IAI46_07605 0.46 +0.8 1,606,018 - IAI46_07605 0.46 +1.4 1,606,178 + IAI46_07605 0.64 +1.5 1,606,179 - IAI46_07605 0.64 +0.1 1,606,179 - IAI46_07605 0.64 -0.5 1,606,310 + IAI46_07605 0.78 -0.3 1,606,311 - IAI46_07605 0.78 +1.2 1,606,311 - IAI46_07605 0.78 +0.3 1,606,413 + IAI46_07605 0.89 -0.4 1,606,413 + IAI46_07605 0.89 -0.8 1,606,413 + IAI46_07605 0.89 +0.2 1,606,413 + IAI46_07605 0.89 -1.8 1,606,413 + IAI46_07605 0.89 -0.3 1,606,414 - IAI46_07605 0.89 +0.9 1,606,476 - -0.7 1,606,606 - -0.4 1,606,627 - +0.4 1,606,720 - +0.1 1,606,800 + +0.5 1,606,801 - -0.1 1,606,806 + -0.4 1,606,806 + +0.3 1,606,807 - +0.1 1,606,807 - -0.3 1,606,894 + IAI46_07610 0.13 +0.6 1,606,894 + IAI46_07610 0.13 +1.2 1,606,895 - IAI46_07610 0.13 -1.2 1,607,018 + IAI46_07610 0.29 +0.3 1,607,018 + IAI46_07610 0.29 -0.5 1,607,018 + IAI46_07610 0.29 -0.1 1,607,018 + IAI46_07610 0.29 -0.3 1,607,019 - IAI46_07610 0.29 +0.1 1,607,019 - IAI46_07610 0.29 +0.1 1,607,019 - IAI46_07610 0.29 +1.1 1,607,104 + IAI46_07610 0.40 -0.3 1,607,104 + IAI46_07610 0.40 +0.3 1,607,188 - IAI46_07610 0.51 -1.4 1,607,277 + IAI46_07610 0.62 -0.3 1,607,277 + IAI46_07610 0.62 +1.7 1,607,277 + IAI46_07610 0.62 -1.3 1,607,277 + IAI46_07610 0.62 +0.2 1,607,277 + IAI46_07610 0.62 -1.4 1,607,277 + IAI46_07610 0.62 -0.3 1,607,277 + IAI46_07610 0.62 -0.5 1,607,277 + IAI46_07610 0.62 -0.2 1,607,305 + IAI46_07610 0.66 +0.1 1,607,356 + IAI46_07610 0.73 +1.5 1,607,402 - IAI46_07610 0.79 +1.1 1,607,436 + IAI46_07610 0.83 +1.4 1,607,436 + IAI46_07610 0.83 +0.4 1,607,436 + IAI46_07610 0.83 +0.3 1,607,437 - IAI46_07610 0.83 -0.3 1,607,444 + IAI46_07610 0.84 -0.9 1,607,444 + IAI46_07610 0.84 -0.3 1,607,444 + IAI46_07610 0.84 -0.2 1,607,479 + IAI46_07610 0.89 +0.2 1,607,480 - IAI46_07610 0.89 +0.4 1,607,480 - IAI46_07610 0.89 +0.7 1,607,482 + IAI46_07610 0.89 -0.3
Or see this region's nucleotide sequence