Strain Fitness in Serratia liquefaciens MT49 around IAI46_07605

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07600 and IAI46_07605 overlap by 4 nucleotidesIAI46_07605 and IAI46_07610 are separated by 285 nucleotides IAI46_07600: IAI46_07600 - four-carbon acid sugar kinase family protein, at 1,604,334 to 1,605,599 _07600 IAI46_07605: IAI46_07605 - NAD(P)-dependent oxidoreductase, at 1,605,596 to 1,606,510 _07605 IAI46_07610: IAI46_07610 - DeoR/GlpR transcriptional regulator, at 1,606,796 to 1,607,566 _07610 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -2 -1 0 1at 1604.659 kb on + strand, within IAI46_07600at 1604.659 kb on + strand, within IAI46_07600at 1604.660 kb on - strand, within IAI46_07600at 1604.660 kb on - strand, within IAI46_07600at 1604.660 kb on - strand, within IAI46_07600at 1604.698 kb on - strand, within IAI46_07600at 1604.722 kb on + strand, within IAI46_07600at 1604.722 kb on + strand, within IAI46_07600at 1604.723 kb on - strand, within IAI46_07600at 1605.002 kb on + strand, within IAI46_07600at 1605.017 kb on - strand, within IAI46_07600at 1605.218 kb on - strand, within IAI46_07600at 1605.218 kb on - strand, within IAI46_07600at 1605.218 kb on - strand, within IAI46_07600at 1605.226 kb on + strand, within IAI46_07600at 1605.352 kb on + strand, within IAI46_07600at 1605.499 kb on - strandat 1605.507 kb on + strandat 1605.700 kb on + strand, within IAI46_07605at 1605.700 kb on + strand, within IAI46_07605at 1605.700 kb on + strand, within IAI46_07605at 1605.704 kb on - strand, within IAI46_07605at 1605.704 kb on - strand, within IAI46_07605at 1605.832 kb on + strand, within IAI46_07605at 1605.882 kb on + strand, within IAI46_07605at 1605.883 kb on - strand, within IAI46_07605at 1606.017 kb on + strand, within IAI46_07605at 1606.017 kb on + strand, within IAI46_07605at 1606.018 kb on - strand, within IAI46_07605at 1606.178 kb on + strand, within IAI46_07605at 1606.179 kb on - strand, within IAI46_07605at 1606.179 kb on - strand, within IAI46_07605at 1606.310 kb on + strand, within IAI46_07605at 1606.311 kb on - strand, within IAI46_07605at 1606.311 kb on - strand, within IAI46_07605at 1606.413 kb on + strand, within IAI46_07605at 1606.413 kb on + strand, within IAI46_07605at 1606.413 kb on + strand, within IAI46_07605at 1606.413 kb on + strand, within IAI46_07605at 1606.413 kb on + strand, within IAI46_07605at 1606.414 kb on - strand, within IAI46_07605at 1606.476 kb on - strandat 1606.606 kb on - strandat 1606.627 kb on - strandat 1606.720 kb on - strandat 1606.800 kb on + strandat 1606.801 kb on - strandat 1606.806 kb on + strandat 1606.806 kb on + strandat 1606.807 kb on - strandat 1606.807 kb on - strandat 1606.894 kb on + strand, within IAI46_07610at 1606.894 kb on + strand, within IAI46_07610at 1606.895 kb on - strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.104 kb on + strand, within IAI46_07610at 1607.104 kb on + strand, within IAI46_07610at 1607.188 kb on - strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.305 kb on + strand, within IAI46_07610at 1607.356 kb on + strand, within IAI46_07610at 1607.402 kb on - strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.437 kb on - strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.479 kb on + strand, within IAI46_07610at 1607.480 kb on - strand, within IAI46_07610at 1607.480 kb on - strand, within IAI46_07610at 1607.482 kb on + strand, within IAI46_07610

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,604,659 + IAI46_07600 0.26 -0.1
1,604,659 + IAI46_07600 0.26 +0.4
1,604,660 - IAI46_07600 0.26 -0.3
1,604,660 - IAI46_07600 0.26 +0.5
1,604,660 - IAI46_07600 0.26 -0.1
1,604,698 - IAI46_07600 0.29 +0.1
1,604,722 + IAI46_07600 0.31 +0.3
1,604,722 + IAI46_07600 0.31 +0.2
1,604,723 - IAI46_07600 0.31 -0.2
1,605,002 + IAI46_07600 0.53 +0.1
1,605,017 - IAI46_07600 0.54 -1.9
1,605,218 - IAI46_07600 0.70 +0.2
1,605,218 - IAI46_07600 0.70 -0.1
1,605,218 - IAI46_07600 0.70 -0.2
1,605,226 + IAI46_07600 0.70 +1.5
1,605,352 + IAI46_07600 0.80 +1.4
1,605,499 - +1.0
1,605,507 + -0.2
1,605,700 + IAI46_07605 0.11 -2.1
1,605,700 + IAI46_07605 0.11 -0.1
1,605,700 + IAI46_07605 0.11 +1.2
1,605,704 - IAI46_07605 0.12 -0.4
1,605,704 - IAI46_07605 0.12 +0.3
1,605,832 + IAI46_07605 0.26 +1.3
1,605,882 + IAI46_07605 0.31 +1.0
1,605,883 - IAI46_07605 0.31 -0.7
1,606,017 + IAI46_07605 0.46 +0.3
1,606,017 + IAI46_07605 0.46 +0.8
1,606,018 - IAI46_07605 0.46 +1.4
1,606,178 + IAI46_07605 0.64 +1.5
1,606,179 - IAI46_07605 0.64 +0.1
1,606,179 - IAI46_07605 0.64 -0.5
1,606,310 + IAI46_07605 0.78 -0.3
1,606,311 - IAI46_07605 0.78 +1.2
1,606,311 - IAI46_07605 0.78 +0.3
1,606,413 + IAI46_07605 0.89 -0.4
1,606,413 + IAI46_07605 0.89 -0.8
1,606,413 + IAI46_07605 0.89 +0.2
1,606,413 + IAI46_07605 0.89 -1.8
1,606,413 + IAI46_07605 0.89 -0.3
1,606,414 - IAI46_07605 0.89 +0.9
1,606,476 - -0.7
1,606,606 - -0.4
1,606,627 - +0.4
1,606,720 - +0.1
1,606,800 + +0.5
1,606,801 - -0.1
1,606,806 + -0.4
1,606,806 + +0.3
1,606,807 - +0.1
1,606,807 - -0.3
1,606,894 + IAI46_07610 0.13 +0.6
1,606,894 + IAI46_07610 0.13 +1.2
1,606,895 - IAI46_07610 0.13 -1.2
1,607,018 + IAI46_07610 0.29 +0.3
1,607,018 + IAI46_07610 0.29 -0.5
1,607,018 + IAI46_07610 0.29 -0.1
1,607,018 + IAI46_07610 0.29 -0.3
1,607,019 - IAI46_07610 0.29 +0.1
1,607,019 - IAI46_07610 0.29 +0.1
1,607,019 - IAI46_07610 0.29 +1.1
1,607,104 + IAI46_07610 0.40 -0.3
1,607,104 + IAI46_07610 0.40 +0.3
1,607,188 - IAI46_07610 0.51 -1.4
1,607,277 + IAI46_07610 0.62 -0.3
1,607,277 + IAI46_07610 0.62 +1.7
1,607,277 + IAI46_07610 0.62 -1.3
1,607,277 + IAI46_07610 0.62 +0.2
1,607,277 + IAI46_07610 0.62 -1.4
1,607,277 + IAI46_07610 0.62 -0.3
1,607,277 + IAI46_07610 0.62 -0.5
1,607,277 + IAI46_07610 0.62 -0.2
1,607,305 + IAI46_07610 0.66 +0.1
1,607,356 + IAI46_07610 0.73 +1.5
1,607,402 - IAI46_07610 0.79 +1.1
1,607,436 + IAI46_07610 0.83 +1.4
1,607,436 + IAI46_07610 0.83 +0.4
1,607,436 + IAI46_07610 0.83 +0.3
1,607,437 - IAI46_07610 0.83 -0.3
1,607,444 + IAI46_07610 0.84 -0.9
1,607,444 + IAI46_07610 0.84 -0.3
1,607,444 + IAI46_07610 0.84 -0.2
1,607,479 + IAI46_07610 0.89 +0.2
1,607,480 - IAI46_07610 0.89 +0.4
1,607,480 - IAI46_07610 0.89 +0.7
1,607,482 + IAI46_07610 0.89 -0.3

Or see this region's nucleotide sequence