Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07465 and IAI46_07470 are separated by 73 nucleotides IAI46_07470 and IAI46_07475 are separated by 2 nucleotides IAI46_07475 and IAI46_07480 are separated by 100 nucleotides
IAI46_07465: IAI46_07465 - LysR family transcriptional regulator, at 1,578,048 to 1,578,962
_07465
IAI46_07470: IAI46_07470 - LysE family translocator, at 1,579,036 to 1,579,665
_07470
IAI46_07475: IAI46_07475 - helix-turn-helix domain-containing protein, at 1,579,668 to 1,580,504
_07475
IAI46_07480: IAI46_07480 - MFS transporter, at 1,580,605 to 1,582,029
_07480
Position (kb)
1579
1580 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1578.044 kb on + strand at 1578.045 kb on - strand at 1578.068 kb on - strand at 1578.068 kb on - strand at 1578.113 kb on + strand at 1578.252 kb on + strand, within IAI46_07465 at 1578.550 kb on + strand, within IAI46_07465 at 1578.635 kb on - strand, within IAI46_07465 at 1578.635 kb on - strand, within IAI46_07465 at 1578.651 kb on - strand, within IAI46_07465 at 1578.684 kb on - strand, within IAI46_07465 at 1578.728 kb on + strand, within IAI46_07465 at 1578.975 kb on - strand at 1578.999 kb on - strand at 1579.025 kb on - strand at 1579.107 kb on + strand, within IAI46_07470 at 1579.107 kb on + strand, within IAI46_07470 at 1579.189 kb on + strand, within IAI46_07470 at 1579.189 kb on + strand, within IAI46_07470 at 1579.252 kb on + strand, within IAI46_07470 at 1579.287 kb on - strand, within IAI46_07470 at 1579.287 kb on - strand, within IAI46_07470 at 1579.502 kb on + strand, within IAI46_07470 at 1579.503 kb on - strand, within IAI46_07470 at 1579.525 kb on - strand, within IAI46_07470 at 1579.664 kb on - strand at 1579.669 kb on + strand at 1579.669 kb on + strand at 1579.670 kb on - strand at 1579.670 kb on - strand at 1579.727 kb on - strand at 1579.857 kb on + strand, within IAI46_07475 at 1579.858 kb on - strand, within IAI46_07475 at 1579.936 kb on + strand, within IAI46_07475 at 1579.937 kb on - strand, within IAI46_07475 at 1580.033 kb on + strand, within IAI46_07475 at 1580.033 kb on + strand, within IAI46_07475 at 1580.034 kb on - strand, within IAI46_07475 at 1580.034 kb on - strand, within IAI46_07475 at 1580.034 kb on - strand, within IAI46_07475 at 1580.121 kb on + strand, within IAI46_07475 at 1580.122 kb on - strand, within IAI46_07475 at 1580.125 kb on + strand, within IAI46_07475 at 1580.126 kb on - strand, within IAI46_07475 at 1580.262 kb on + strand, within IAI46_07475 at 1580.262 kb on + strand, within IAI46_07475 at 1580.263 kb on - strand, within IAI46_07475 at 1580.333 kb on - strand, within IAI46_07475 at 1580.346 kb on + strand, within IAI46_07475 at 1580.413 kb on - strand, within IAI46_07475 at 1580.528 kb on + strand at 1580.528 kb on + strand at 1580.529 kb on - strand at 1580.531 kb on + strand at 1580.532 kb on - strand at 1580.534 kb on + strand at 1580.536 kb on + strand at 1580.537 kb on - strand at 1580.544 kb on + strand at 1580.545 kb on - strand at 1580.548 kb on + strand at 1580.548 kb on + strand at 1580.549 kb on - strand at 1580.604 kb on + strand at 1580.605 kb on - strand at 1580.618 kb on + strand at 1580.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 1,578,044 + +0.9 1,578,045 - -0.2 1,578,068 - -0.9 1,578,068 - -1.0 1,578,113 + +1.2 1,578,252 + IAI46_07465 0.22 +1.6 1,578,550 + IAI46_07465 0.55 +0.6 1,578,635 - IAI46_07465 0.64 +0.7 1,578,635 - IAI46_07465 0.64 -0.4 1,578,651 - IAI46_07465 0.66 -0.1 1,578,684 - IAI46_07465 0.70 +0.1 1,578,728 + IAI46_07465 0.74 +0.1 1,578,975 - +0.6 1,578,999 - +0.8 1,579,025 - +1.5 1,579,107 + IAI46_07470 0.11 -0.9 1,579,107 + IAI46_07470 0.11 -0.4 1,579,189 + IAI46_07470 0.24 -0.7 1,579,189 + IAI46_07470 0.24 +0.2 1,579,252 + IAI46_07470 0.34 -0.0 1,579,287 - IAI46_07470 0.40 +1.1 1,579,287 - IAI46_07470 0.40 +0.2 1,579,502 + IAI46_07470 0.74 -0.4 1,579,503 - IAI46_07470 0.74 +0.4 1,579,525 - IAI46_07470 0.78 -3.5 1,579,664 - +0.2 1,579,669 + +1.9 1,579,669 + -0.5 1,579,670 - +1.9 1,579,670 - +0.3 1,579,727 - +1.2 1,579,857 + IAI46_07475 0.23 -0.6 1,579,858 - IAI46_07475 0.23 +1.2 1,579,936 + IAI46_07475 0.32 +1.1 1,579,937 - IAI46_07475 0.32 -0.4 1,580,033 + IAI46_07475 0.44 -0.2 1,580,033 + IAI46_07475 0.44 +0.2 1,580,034 - IAI46_07475 0.44 +1.2 1,580,034 - IAI46_07475 0.44 +0.6 1,580,034 - IAI46_07475 0.44 -1.8 1,580,121 + IAI46_07475 0.54 -1.4 1,580,122 - IAI46_07475 0.54 +0.7 1,580,125 + IAI46_07475 0.55 +1.5 1,580,126 - IAI46_07475 0.55 -0.1 1,580,262 + IAI46_07475 0.71 -0.9 1,580,262 + IAI46_07475 0.71 -0.4 1,580,263 - IAI46_07475 0.71 +0.3 1,580,333 - IAI46_07475 0.79 +0.1 1,580,346 + IAI46_07475 0.81 -1.2 1,580,413 - IAI46_07475 0.89 -1.1 1,580,528 + +0.8 1,580,528 + +1.2 1,580,529 - +1.9 1,580,531 + +0.4 1,580,532 - +1.9 1,580,534 + +0.5 1,580,536 + -0.0 1,580,537 - +0.4 1,580,544 + +0.2 1,580,545 - -1.6 1,580,548 + +0.5 1,580,548 + -0.1 1,580,549 - +1.3 1,580,604 + +0.1 1,580,605 - +0.6 1,580,618 + +0.2 1,580,618 + -1.4
Or see this region's nucleotide sequence