Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07370 and IAI46_07375 overlap by 4 nucleotides IAI46_07375 and IAI46_07380 are separated by 14 nucleotides IAI46_07380 and IAI46_07385 are separated by 27 nucleotides
IAI46_07370: IAI46_07370 - ABC transporter permease, at 1,559,896 to 1,561,056
_07370
IAI46_07375: IAI46_07375 - ABC transporter ATP-binding protein, at 1,561,053 to 1,561,988
_07375
IAI46_07380: IAI46_07380 - ABC transporter permease, at 1,562,003 to 1,562,761
_07380
IAI46_07385: IAI46_07385 - PhnD/SsuA/transferrin family substrate-binding protein, at 1,562,789 to 1,563,550
_07385
Position (kb)
1561
1562 Strain fitness (log2 ratio)
-1
0
1
2 at 1560.053 kb on + strand, within IAI46_07370 at 1560.216 kb on + strand, within IAI46_07370 at 1560.322 kb on - strand, within IAI46_07370 at 1560.397 kb on + strand, within IAI46_07370 at 1560.401 kb on - strand, within IAI46_07370 at 1560.401 kb on - strand, within IAI46_07370 at 1560.448 kb on - strand, within IAI46_07370 at 1560.448 kb on - strand, within IAI46_07370 at 1560.448 kb on - strand, within IAI46_07370 at 1560.694 kb on + strand, within IAI46_07370 at 1560.695 kb on - strand, within IAI46_07370 at 1560.695 kb on - strand, within IAI46_07370 at 1561.023 kb on + strand at 1561.184 kb on - strand, within IAI46_07375 at 1561.287 kb on + strand, within IAI46_07375 at 1561.288 kb on - strand, within IAI46_07375 at 1561.288 kb on - strand, within IAI46_07375 at 1561.621 kb on + strand, within IAI46_07375 at 1561.844 kb on + strand, within IAI46_07375 at 1561.844 kb on + strand, within IAI46_07375 at 1561.845 kb on - strand, within IAI46_07375 at 1561.845 kb on - strand, within IAI46_07375 at 1562.123 kb on + strand, within IAI46_07380 at 1562.141 kb on - strand, within IAI46_07380 at 1562.322 kb on + strand, within IAI46_07380 at 1562.458 kb on + strand, within IAI46_07380 at 1562.458 kb on + strand, within IAI46_07380 at 1562.458 kb on + strand, within IAI46_07380 at 1562.459 kb on - strand, within IAI46_07380 at 1562.627 kb on - strand, within IAI46_07380 at 1562.627 kb on - strand, within IAI46_07380 at 1562.711 kb on + strand at 1562.767 kb on + strand at 1562.768 kb on - strand at 1562.779 kb on - strand at 1562.779 kb on - strand at 1562.779 kb on - strand at 1562.792 kb on + strand at 1562.792 kb on + strand at 1562.793 kb on - strand at 1562.793 kb on - strand at 1562.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 1,560,053 + IAI46_07370 0.14 -1.1 1,560,216 + IAI46_07370 0.28 -0.4 1,560,322 - IAI46_07370 0.37 +0.8 1,560,397 + IAI46_07370 0.43 +0.8 1,560,401 - IAI46_07370 0.43 -0.3 1,560,401 - IAI46_07370 0.43 -0.2 1,560,448 - IAI46_07370 0.48 +0.7 1,560,448 - IAI46_07370 0.48 -0.4 1,560,448 - IAI46_07370 0.48 +0.0 1,560,694 + IAI46_07370 0.69 +0.8 1,560,695 - IAI46_07370 0.69 -0.6 1,560,695 - IAI46_07370 0.69 -1.6 1,561,023 + -0.9 1,561,184 - IAI46_07375 0.14 -0.3 1,561,287 + IAI46_07375 0.25 -0.0 1,561,288 - IAI46_07375 0.25 +0.4 1,561,288 - IAI46_07375 0.25 +1.0 1,561,621 + IAI46_07375 0.61 +1.2 1,561,844 + IAI46_07375 0.85 +0.2 1,561,844 + IAI46_07375 0.85 +0.2 1,561,845 - IAI46_07375 0.85 +0.5 1,561,845 - IAI46_07375 0.85 -0.8 1,562,123 + IAI46_07380 0.16 +1.3 1,562,141 - IAI46_07380 0.18 +0.6 1,562,322 + IAI46_07380 0.42 +1.1 1,562,458 + IAI46_07380 0.60 -0.1 1,562,458 + IAI46_07380 0.60 +0.2 1,562,458 + IAI46_07380 0.60 +0.2 1,562,459 - IAI46_07380 0.60 -0.4 1,562,627 - IAI46_07380 0.82 +1.9 1,562,627 - IAI46_07380 0.82 -0.7 1,562,711 + +0.4 1,562,767 + -0.4 1,562,768 - +0.5 1,562,779 - +0.5 1,562,779 - +0.3 1,562,779 - +0.5 1,562,792 + -0.2 1,562,792 + +0.3 1,562,793 - +0.8 1,562,793 - -0.6 1,562,848 - -0.2
Or see this region's nucleotide sequence