Strain Fitness in Serratia liquefaciens MT49 around IAI46_07375

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07370 and IAI46_07375 overlap by 4 nucleotidesIAI46_07375 and IAI46_07380 are separated by 14 nucleotidesIAI46_07380 and IAI46_07385 are separated by 27 nucleotides IAI46_07370: IAI46_07370 - ABC transporter permease, at 1,559,896 to 1,561,056 _07370 IAI46_07375: IAI46_07375 - ABC transporter ATP-binding protein, at 1,561,053 to 1,561,988 _07375 IAI46_07380: IAI46_07380 - ABC transporter permease, at 1,562,003 to 1,562,761 _07380 IAI46_07385: IAI46_07385 - PhnD/SsuA/transferrin family substrate-binding protein, at 1,562,789 to 1,563,550 _07385 Position (kb) 1561 1562Strain fitness (log2 ratio) -1 0 1 2at 1560.053 kb on + strand, within IAI46_07370at 1560.216 kb on + strand, within IAI46_07370at 1560.322 kb on - strand, within IAI46_07370at 1560.397 kb on + strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.694 kb on + strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370at 1561.023 kb on + strandat 1561.184 kb on - strand, within IAI46_07375at 1561.287 kb on + strand, within IAI46_07375at 1561.288 kb on - strand, within IAI46_07375at 1561.288 kb on - strand, within IAI46_07375at 1561.621 kb on + strand, within IAI46_07375at 1561.844 kb on + strand, within IAI46_07375at 1561.844 kb on + strand, within IAI46_07375at 1561.845 kb on - strand, within IAI46_07375at 1561.845 kb on - strand, within IAI46_07375at 1562.123 kb on + strand, within IAI46_07380at 1562.141 kb on - strand, within IAI46_07380at 1562.322 kb on + strand, within IAI46_07380at 1562.458 kb on + strand, within IAI46_07380at 1562.458 kb on + strand, within IAI46_07380at 1562.458 kb on + strand, within IAI46_07380at 1562.459 kb on - strand, within IAI46_07380at 1562.627 kb on - strand, within IAI46_07380at 1562.627 kb on - strand, within IAI46_07380at 1562.711 kb on + strandat 1562.767 kb on + strandat 1562.768 kb on - strandat 1562.779 kb on - strandat 1562.779 kb on - strandat 1562.779 kb on - strandat 1562.792 kb on + strandat 1562.792 kb on + strandat 1562.793 kb on - strandat 1562.793 kb on - strandat 1562.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,560,053 + IAI46_07370 0.14 -1.1
1,560,216 + IAI46_07370 0.28 -0.4
1,560,322 - IAI46_07370 0.37 +0.8
1,560,397 + IAI46_07370 0.43 +0.8
1,560,401 - IAI46_07370 0.43 -0.3
1,560,401 - IAI46_07370 0.43 -0.2
1,560,448 - IAI46_07370 0.48 +0.7
1,560,448 - IAI46_07370 0.48 -0.4
1,560,448 - IAI46_07370 0.48 +0.0
1,560,694 + IAI46_07370 0.69 +0.8
1,560,695 - IAI46_07370 0.69 -0.6
1,560,695 - IAI46_07370 0.69 -1.6
1,561,023 + -0.9
1,561,184 - IAI46_07375 0.14 -0.3
1,561,287 + IAI46_07375 0.25 -0.0
1,561,288 - IAI46_07375 0.25 +0.4
1,561,288 - IAI46_07375 0.25 +1.0
1,561,621 + IAI46_07375 0.61 +1.2
1,561,844 + IAI46_07375 0.85 +0.2
1,561,844 + IAI46_07375 0.85 +0.2
1,561,845 - IAI46_07375 0.85 +0.5
1,561,845 - IAI46_07375 0.85 -0.8
1,562,123 + IAI46_07380 0.16 +1.3
1,562,141 - IAI46_07380 0.18 +0.6
1,562,322 + IAI46_07380 0.42 +1.1
1,562,458 + IAI46_07380 0.60 -0.1
1,562,458 + IAI46_07380 0.60 +0.2
1,562,458 + IAI46_07380 0.60 +0.2
1,562,459 - IAI46_07380 0.60 -0.4
1,562,627 - IAI46_07380 0.82 +1.9
1,562,627 - IAI46_07380 0.82 -0.7
1,562,711 + +0.4
1,562,767 + -0.4
1,562,768 - +0.5
1,562,779 - +0.5
1,562,779 - +0.3
1,562,779 - +0.5
1,562,792 + -0.2
1,562,792 + +0.3
1,562,793 - +0.8
1,562,793 - -0.6
1,562,848 - -0.2

Or see this region's nucleotide sequence