Strain Fitness in Serratia liquefaciens MT49 around IAI46_04815

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04810 and IAI46_04815 are separated by 249 nucleotidesIAI46_04815 and IAI46_04820 are separated by 781 nucleotides IAI46_04810: IAI46_04810 - mechanosensitive ion channel, at 1,033,905 to 1,035,170 _04810 IAI46_04815: IAI46_04815 - maltodextrin glucosidase, at 1,035,420 to 1,037,243 _04815 IAI46_04820: IAI46_04820 - gamma-glutamyltransferase, at 1,038,025 to 1,039,788 _04820 Position (kb) 1035 1036 1037 1038Strain fitness (log2 ratio) -2 -1 0 1at 1034.534 kb on - strand, within IAI46_04810at 1034.576 kb on + strand, within IAI46_04810at 1034.927 kb on + strand, within IAI46_04810at 1034.928 kb on - strand, within IAI46_04810at 1034.974 kb on + strand, within IAI46_04810at 1035.156 kb on + strandat 1035.156 kb on + strandat 1035.182 kb on + strandat 1035.228 kb on + strandat 1035.244 kb on + strandat 1035.269 kb on + strandat 1035.273 kb on + strandat 1035.273 kb on + strandat 1035.273 kb on + strandat 1035.293 kb on + strandat 1035.293 kb on + strandat 1035.293 kb on + strandat 1035.402 kb on + strandat 1035.496 kb on + strandat 1035.530 kb on - strandat 1035.849 kb on + strand, within IAI46_04815at 1035.933 kb on + strand, within IAI46_04815at 1035.933 kb on + strand, within IAI46_04815at 1035.933 kb on + strand, within IAI46_04815at 1035.972 kb on + strand, within IAI46_04815at 1036.002 kb on + strand, within IAI46_04815at 1036.002 kb on + strand, within IAI46_04815at 1036.003 kb on - strand, within IAI46_04815at 1036.037 kb on + strand, within IAI46_04815at 1036.038 kb on - strand, within IAI46_04815at 1036.038 kb on - strand, within IAI46_04815at 1036.042 kb on + strand, within IAI46_04815at 1036.042 kb on - strand, within IAI46_04815at 1036.042 kb on - strand, within IAI46_04815at 1036.042 kb on - strand, within IAI46_04815at 1036.042 kb on - strand, within IAI46_04815at 1036.056 kb on + strand, within IAI46_04815at 1036.056 kb on + strand, within IAI46_04815at 1036.056 kb on + strand, within IAI46_04815at 1036.056 kb on + strand, within IAI46_04815at 1036.056 kb on + strand, within IAI46_04815at 1036.057 kb on - strand, within IAI46_04815at 1036.057 kb on - strand, within IAI46_04815at 1036.057 kb on - strand, within IAI46_04815at 1036.059 kb on + strand, within IAI46_04815at 1036.059 kb on + strand, within IAI46_04815at 1036.157 kb on + strand, within IAI46_04815at 1036.367 kb on - strand, within IAI46_04815at 1036.427 kb on + strand, within IAI46_04815at 1036.427 kb on + strand, within IAI46_04815at 1036.427 kb on + strand, within IAI46_04815at 1036.428 kb on - strand, within IAI46_04815at 1036.428 kb on - strand, within IAI46_04815at 1036.483 kb on - strand, within IAI46_04815at 1036.483 kb on - strand, within IAI46_04815at 1036.493 kb on + strand, within IAI46_04815at 1036.515 kb on + strand, within IAI46_04815at 1036.515 kb on + strand, within IAI46_04815at 1036.516 kb on - strand, within IAI46_04815at 1036.516 kb on - strand, within IAI46_04815at 1036.516 kb on - strand, within IAI46_04815at 1036.516 kb on - strand, within IAI46_04815at 1036.520 kb on - strand, within IAI46_04815at 1036.587 kb on + strand, within IAI46_04815at 1036.587 kb on + strand, within IAI46_04815at 1036.587 kb on + strand, within IAI46_04815at 1036.587 kb on + strand, within IAI46_04815at 1036.588 kb on - strand, within IAI46_04815at 1036.588 kb on - strand, within IAI46_04815at 1036.588 kb on - strand, within IAI46_04815at 1036.588 kb on - strand, within IAI46_04815at 1036.774 kb on + strand, within IAI46_04815at 1036.774 kb on + strand, within IAI46_04815at 1036.846 kb on + strand, within IAI46_04815at 1036.846 kb on + strand, within IAI46_04815at 1036.847 kb on - strand, within IAI46_04815at 1036.847 kb on - strand, within IAI46_04815at 1036.849 kb on - strand, within IAI46_04815at 1036.851 kb on + strand, within IAI46_04815at 1036.851 kb on + strand, within IAI46_04815at 1036.898 kb on + strand, within IAI46_04815at 1036.958 kb on + strand, within IAI46_04815at 1037.038 kb on + strand, within IAI46_04815at 1037.115 kb on + strandat 1037.281 kb on - strandat 1037.281 kb on - strandat 1037.281 kb on - strandat 1037.883 kb on + strandat 1037.888 kb on + strandat 1037.889 kb on - strandat 1037.889 kb on - strandat 1037.889 kb on - strandat 1037.943 kb on + strandat 1037.955 kb on + strandat 1037.956 kb on - strandat 1037.956 kb on - strandat 1037.969 kb on + strandat 1037.969 kb on + strandat 1038.029 kb on + strandat 1038.030 kb on - strandat 1038.074 kb on + strandat 1038.080 kb on + strandat 1038.081 kb on - strandat 1038.209 kb on + strand, within IAI46_04820at 1038.210 kb on - strand, within IAI46_04820at 1038.231 kb on + strand, within IAI46_04820at 1038.232 kb on - strand, within IAI46_04820

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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1,034,534 - IAI46_04810 0.50 -0.1
1,034,576 + IAI46_04810 0.53 +0.2
1,034,927 + IAI46_04810 0.81 -0.4
1,034,928 - IAI46_04810 0.81 +0.7
1,034,974 + IAI46_04810 0.84 +0.4
1,035,156 + +0.2
1,035,156 + +0.8
1,035,182 + -0.6
1,035,228 + +0.4
1,035,244 + +0.0
1,035,269 + +1.3
1,035,273 + -0.1
1,035,273 + -0.0
1,035,273 + +0.0
1,035,293 + -0.8
1,035,293 + -0.2
1,035,293 + -0.0
1,035,402 + -0.1
1,035,496 + +0.2
1,035,530 - -2.1
1,035,849 + IAI46_04815 0.24 +1.0
1,035,933 + IAI46_04815 0.28 +0.1
1,035,933 + IAI46_04815 0.28 -1.5
1,035,933 + IAI46_04815 0.28 -1.0
1,035,972 + IAI46_04815 0.30 -1.0
1,036,002 + IAI46_04815 0.32 -0.1
1,036,002 + IAI46_04815 0.32 -0.2
1,036,003 - IAI46_04815 0.32 +1.0
1,036,037 + IAI46_04815 0.34 +1.0
1,036,038 - IAI46_04815 0.34 +0.0
1,036,038 - IAI46_04815 0.34 -0.3
1,036,042 + IAI46_04815 0.34 +0.2
1,036,042 - IAI46_04815 0.34 -1.1
1,036,042 - IAI46_04815 0.34 +0.1
1,036,042 - IAI46_04815 0.34 +0.5
1,036,042 - IAI46_04815 0.34 -0.7
1,036,056 + IAI46_04815 0.35 +0.7
1,036,056 + IAI46_04815 0.35 -0.0
1,036,056 + IAI46_04815 0.35 -2.4
1,036,056 + IAI46_04815 0.35 -1.1
1,036,056 + IAI46_04815 0.35 +0.5
1,036,057 - IAI46_04815 0.35 -1.6
1,036,057 - IAI46_04815 0.35 +1.2
1,036,057 - IAI46_04815 0.35 +0.1
1,036,059 + IAI46_04815 0.35 +1.7
1,036,059 + IAI46_04815 0.35 -1.2
1,036,157 + IAI46_04815 0.40 -0.3
1,036,367 - IAI46_04815 0.52 +1.2
1,036,427 + IAI46_04815 0.55 +1.3
1,036,427 + IAI46_04815 0.55 +0.2
1,036,427 + IAI46_04815 0.55 +1.0
1,036,428 - IAI46_04815 0.55 -0.1
1,036,428 - IAI46_04815 0.55 +0.7
1,036,483 - IAI46_04815 0.58 +0.0
1,036,483 - IAI46_04815 0.58 -0.0
1,036,493 + IAI46_04815 0.59 -0.4
1,036,515 + IAI46_04815 0.60 -0.4
1,036,515 + IAI46_04815 0.60 -1.0
1,036,516 - IAI46_04815 0.60 +1.6
1,036,516 - IAI46_04815 0.60 -0.4
1,036,516 - IAI46_04815 0.60 +0.2
1,036,516 - IAI46_04815 0.60 -0.2
1,036,520 - IAI46_04815 0.60 -2.5
1,036,587 + IAI46_04815 0.64 -0.6
1,036,587 + IAI46_04815 0.64 +0.4
1,036,587 + IAI46_04815 0.64 -0.6
1,036,587 + IAI46_04815 0.64 +0.8
1,036,588 - IAI46_04815 0.64 -0.1
1,036,588 - IAI46_04815 0.64 +0.5
1,036,588 - IAI46_04815 0.64 -1.0
1,036,588 - IAI46_04815 0.64 +0.3
1,036,774 + IAI46_04815 0.74 -0.3
1,036,774 + IAI46_04815 0.74 -0.0
1,036,846 + IAI46_04815 0.78 -1.5
1,036,846 + IAI46_04815 0.78 +0.1
1,036,847 - IAI46_04815 0.78 +0.8
1,036,847 - IAI46_04815 0.78 -0.6
1,036,849 - IAI46_04815 0.78 -0.7
1,036,851 + IAI46_04815 0.78 +0.2
1,036,851 + IAI46_04815 0.78 +0.4
1,036,898 + IAI46_04815 0.81 -0.6
1,036,958 + IAI46_04815 0.84 +0.9
1,037,038 + IAI46_04815 0.89 +0.2
1,037,115 + -0.8
1,037,281 - -1.3
1,037,281 - -0.6
1,037,281 - +1.6
1,037,883 + +0.2
1,037,888 + -0.2
1,037,889 - -0.6
1,037,889 - -0.1
1,037,889 - -0.7
1,037,943 + -1.3
1,037,955 + -0.4
1,037,956 - +1.6
1,037,956 - -0.3
1,037,969 + +0.2
1,037,969 + +0.7
1,038,029 + +0.1
1,038,030 - +0.4
1,038,074 + +1.0
1,038,080 + -1.1
1,038,081 - +0.3
1,038,209 + IAI46_04820 0.10 -0.2
1,038,210 - IAI46_04820 0.10 +1.2
1,038,231 + IAI46_04820 0.12 +0.3
1,038,232 - IAI46_04820 0.12 +0.5

Or see this region's nucleotide sequence