Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04275 and IAI46_04280 overlap by 20 nucleotides IAI46_04280 and IAI46_04285 overlap by 8 nucleotides IAI46_04285 and IAI46_04290 are separated by 37 nucleotides
IAI46_04275: IAI46_04275 - allantoate amidohydrolase, at 918,360 to 919,634
_04275
IAI46_04280: IAI46_04280 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 919,615 to 920,115
_04280
IAI46_04285: IAI46_04285 - hydroxyisourate hydrolase, at 920,108 to 920,443
_04285
IAI46_04290: IAI46_04290 - purine permease, at 920,481 to 921,833
_04290
Position (kb) 920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.139 kb on - strand, within IAI46_04275 at 919.280 kb on + strand, within IAI46_04275 at 919.327 kb on + strand, within IAI46_04275 at 919.328 kb on - strand, within IAI46_04275 at 919.547 kb on - strand at 919.581 kb on + strand at 919.632 kb on + strand at 919.632 kb on + strand at 919.632 kb on + strand at 920.114 kb on - strand at 920.116 kb on + strand at 920.116 kb on + strand at 920.339 kb on + strand, within IAI46_04285 at 920.339 kb on + strand, within IAI46_04285 at 920.339 kb on + strand, within IAI46_04285 at 920.339 kb on + strand, within IAI46_04285 at 920.340 kb on - strand, within IAI46_04285 at 920.420 kb on + strand at 920.441 kb on + strand at 920.442 kb on - strand at 920.476 kb on + strand at 920.476 kb on + strand at 920.476 kb on + strand at 920.476 kb on + strand at 920.477 kb on - strand at 920.477 kb on - strand at 920.477 kb on - strand at 920.477 kb on - strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.480 kb on + strand at 920.481 kb on - strand at 920.481 kb on - strand at 920.481 kb on - strand at 920.481 kb on - strand at 920.574 kb on - strand at 920.574 kb on - strand at 920.574 kb on - strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.586 kb on + strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.587 kb on - strand at 920.600 kb on - strand at 920.600 kb on - strand at 920.600 kb on - strand at 920.617 kb on + strand, within IAI46_04290 at 920.617 kb on + strand, within IAI46_04290 at 920.618 kb on - strand, within IAI46_04290 at 920.618 kb on - strand, within IAI46_04290 at 920.618 kb on - strand, within IAI46_04290 at 920.635 kb on + strand, within IAI46_04290 at 920.636 kb on - strand, within IAI46_04290 at 920.789 kb on - strand, within IAI46_04290 at 920.789 kb on - strand, within IAI46_04290 at 920.789 kb on - strand, within IAI46_04290 at 920.855 kb on - strand, within IAI46_04290 at 920.855 kb on - strand, within IAI46_04290 at 920.861 kb on - strand, within IAI46_04290 at 920.883 kb on - strand, within IAI46_04290 at 921.011 kb on + strand, within IAI46_04290 at 921.011 kb on + strand, within IAI46_04290 at 921.199 kb on - strand, within IAI46_04290 at 921.256 kb on + strand, within IAI46_04290 at 921.260 kb on - strand, within IAI46_04290 at 921.354 kb on - strand, within IAI46_04290
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 919,139 - IAI46_04275 0.61 -0.7 919,280 + IAI46_04275 0.72 -0.4 919,327 + IAI46_04275 0.76 -0.4 919,328 - IAI46_04275 0.76 -0.5 919,547 - -0.1 919,581 + -0.0 919,632 + -2.0 919,632 + +0.1 919,632 + -0.1 920,114 - -2.2 920,116 + -0.8 920,116 + +0.0 920,339 + IAI46_04285 0.69 -0.4 920,339 + IAI46_04285 0.69 -1.0 920,339 + IAI46_04285 0.69 +0.1 920,339 + IAI46_04285 0.69 +0.7 920,340 - IAI46_04285 0.69 +0.6 920,420 + +0.7 920,441 + -2.0 920,442 - +0.4 920,476 + +0.0 920,476 + +1.8 920,476 + -0.1 920,476 + -0.4 920,477 - -1.4 920,477 - -0.1 920,477 - +0.5 920,477 - -0.8 920,480 + +0.0 920,480 + -0.4 920,480 + -1.5 920,480 + +0.6 920,480 + -1.5 920,480 + +1.0 920,480 + -0.1 920,480 + +0.1 920,481 - +1.1 920,481 - +0.5 920,481 - +1.1 920,481 - +0.3 920,574 - +0.2 920,574 - -0.0 920,574 - +0.3 920,586 + -0.9 920,586 + +0.4 920,586 + +1.3 920,586 + -0.1 920,586 + +0.4 920,586 + -0.5 920,586 + +0.2 920,587 - +0.3 920,587 - -1.3 920,587 - +0.7 920,587 - +1.0 920,587 - -0.2 920,587 - +0.6 920,587 - -1.1 920,600 - -0.1 920,600 - -0.1 920,600 - +1.3 920,617 + IAI46_04290 0.10 -0.3 920,617 + IAI46_04290 0.10 +0.5 920,618 - IAI46_04290 0.10 -0.2 920,618 - IAI46_04290 0.10 -0.5 920,618 - IAI46_04290 0.10 +0.7 920,635 + IAI46_04290 0.11 -0.8 920,636 - IAI46_04290 0.11 -0.3 920,789 - IAI46_04290 0.23 +0.7 920,789 - IAI46_04290 0.23 -0.8 920,789 - IAI46_04290 0.23 -0.2 920,855 - IAI46_04290 0.28 +1.3 920,855 - IAI46_04290 0.28 +0.5 920,861 - IAI46_04290 0.28 +0.6 920,883 - IAI46_04290 0.30 +0.7 921,011 + IAI46_04290 0.39 -0.0 921,011 + IAI46_04290 0.39 -0.0 921,199 - IAI46_04290 0.53 -2.5 921,256 + IAI46_04290 0.57 +0.2 921,260 - IAI46_04290 0.58 +0.3 921,354 - IAI46_04290 0.65 -0.9
Or see this region's nucleotide sequence