Strain Fitness in Serratia liquefaciens MT49 around IAI46_04125

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04120 and IAI46_04125 are separated by 243 nucleotidesIAI46_04125 and IAI46_04130 are separated by 62 nucleotides IAI46_04120: IAI46_04120 - MFS transporter, at 887,733 to 888,908 _04120 IAI46_04125: IAI46_04125 - endonuclease/exonuclease/phosphatase family protein, at 889,152 to 889,946 _04125 IAI46_04130: IAI46_04130 - murein transglycosylase D, at 890,009 to 891,394 _04130 Position (kb) 889 890Strain fitness (log2 ratio) -2 -1 0 1 2at 888.163 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.278 kb on + strand, within IAI46_04120at 888.369 kb on + strand, within IAI46_04120at 888.379 kb on + strand, within IAI46_04120at 888.380 kb on - strand, within IAI46_04120at 888.545 kb on + strand, within IAI46_04120at 888.599 kb on + strand, within IAI46_04120at 888.600 kb on - strand, within IAI46_04120at 888.637 kb on + strand, within IAI46_04120at 888.655 kb on + strand, within IAI46_04120at 888.656 kb on - strand, within IAI46_04120at 888.656 kb on - strand, within IAI46_04120at 888.672 kb on + strand, within IAI46_04120at 888.673 kb on - strand, within IAI46_04120at 888.712 kb on + strand, within IAI46_04120at 888.712 kb on + strand, within IAI46_04120at 888.713 kb on - strand, within IAI46_04120at 888.713 kb on - strand, within IAI46_04120at 888.909 kb on + strandat 888.960 kb on + strandat 888.960 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.993 kb on + strandat 888.993 kb on + strandat 888.993 kb on + strandat 888.994 kb on - strandat 888.994 kb on - strandat 889.017 kb on - strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.045 kb on - strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.087 kb on - strandat 889.087 kb on - strandat 889.130 kb on + strandat 889.130 kb on + strandat 889.131 kb on - strandat 889.131 kb on - strandat 889.148 kb on + strandat 889.167 kb on + strandat 889.167 kb on + strandat 889.168 kb on - strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.220 kb on + strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.223 kb on + strandat 889.257 kb on - strand, within IAI46_04125at 889.257 kb on - strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.413 kb on + strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.445 kb on - strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.564 kb on - strand, within IAI46_04125at 889.602 kb on - strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.639 kb on - strand, within IAI46_04125at 889.643 kb on + strand, within IAI46_04125at 889.644 kb on - strand, within IAI46_04125at 889.712 kb on + strand, within IAI46_04125at 889.764 kb on - strand, within IAI46_04125at 889.848 kb on - strand, within IAI46_04125at 889.895 kb on + strandat 889.896 kb on - strandat 890.029 kb on + strandat 890.030 kb on - strandat 890.113 kb on + strandat 890.116 kb on + strandat 890.116 kb on + strandat 890.140 kb on + strandat 890.173 kb on - strand, within IAI46_04130at 890.173 kb on - strand, within IAI46_04130at 890.179 kb on + strand, within IAI46_04130at 890.180 kb on - strand, within IAI46_04130at 890.232 kb on - strand, within IAI46_04130at 890.249 kb on + strand, within IAI46_04130at 890.249 kb on + strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.285 kb on - strand, within IAI46_04130at 890.285 kb on - strand, within IAI46_04130at 890.332 kb on + strand, within IAI46_04130at 890.333 kb on - strand, within IAI46_04130at 890.333 kb on - strand, within IAI46_04130at 890.334 kb on + strand, within IAI46_04130at 890.335 kb on - strand, within IAI46_04130at 890.341 kb on + strand, within IAI46_04130at 890.341 kb on + strand, within IAI46_04130at 890.452 kb on + strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.457 kb on + strand, within IAI46_04130at 890.457 kb on + strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.493 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.506 kb on - strand, within IAI46_04130at 890.555 kb on + strand, within IAI46_04130at 890.556 kb on - strand, within IAI46_04130at 890.562 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.603 kb on - strand, within IAI46_04130at 890.628 kb on + strand, within IAI46_04130at 890.629 kb on - strand, within IAI46_04130at 890.645 kb on - strand, within IAI46_04130at 890.728 kb on + strand, within IAI46_04130at 890.740 kb on + strand, within IAI46_04130at 890.741 kb on - strand, within IAI46_04130at 890.750 kb on - strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.784 kb on + strand, within IAI46_04130at 890.802 kb on - strand, within IAI46_04130at 890.815 kb on + strand, within IAI46_04130at 890.816 kb on - strand, within IAI46_04130at 890.842 kb on + strand, within IAI46_04130at 890.843 kb on - strand, within IAI46_04130at 890.946 kb on - strand, within IAI46_04130

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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888,163 + IAI46_04120 0.37 -0.0
888,227 + IAI46_04120 0.42 -0.7
888,227 + IAI46_04120 0.42 -0.5
888,227 + IAI46_04120 0.42 +0.1
888,278 + IAI46_04120 0.46 +0.1
888,369 + IAI46_04120 0.54 -0.8
888,379 + IAI46_04120 0.55 -0.2
888,380 - IAI46_04120 0.55 -0.2
888,545 + IAI46_04120 0.69 +1.0
888,599 + IAI46_04120 0.74 +0.2
888,600 - IAI46_04120 0.74 -0.2
888,637 + IAI46_04120 0.77 -2.0
888,655 + IAI46_04120 0.78 -0.2
888,656 - IAI46_04120 0.78 +0.5
888,656 - IAI46_04120 0.78 -0.2
888,672 + IAI46_04120 0.80 +1.4
888,673 - IAI46_04120 0.80 +0.3
888,712 + IAI46_04120 0.83 +1.2
888,712 + IAI46_04120 0.83 +1.8
888,713 - IAI46_04120 0.83 -0.6
888,713 - IAI46_04120 0.83 -0.2
888,909 + -1.8
888,960 + +0.2
888,960 + +0.5
888,991 + +0.2
888,991 + +0.5
888,991 + -0.8
888,991 + -0.0
888,991 + +0.1
888,991 + -0.4
888,991 + +0.4
888,992 - -0.0
888,992 - -1.2
888,992 - -0.0
888,992 - +1.4
888,992 - +0.7
888,992 - -0.5
888,992 - -0.2
888,993 + -0.1
888,993 + -0.3
888,993 + +1.6
888,994 - +0.4
888,994 - +0.4
889,017 - -0.4
889,044 + +0.2
889,044 + -1.2
889,044 + -0.5
889,045 - +0.8
889,046 + -0.3
889,046 + +0.2
889,046 + -0.8
889,087 - +0.4
889,087 - +0.5
889,130 + +0.2
889,130 + -0.2
889,131 - +1.0
889,131 - +0.7
889,148 + +0.8
889,167 + +0.2
889,167 + -1.3
889,168 - +0.9
889,179 + -1.7
889,179 + -0.2
889,179 + +1.3
889,180 - +0.9
889,180 - +1.0
889,180 - +0.4
889,180 - +0.1
889,220 + +0.6
889,221 - -0.0
889,221 - +0.0
889,221 - +0.4
889,223 + -1.1
889,257 - IAI46_04125 0.13 +2.0
889,257 - IAI46_04125 0.13 +0.7
889,295 + IAI46_04125 0.18 -0.2
889,295 + IAI46_04125 0.18 -0.0
889,413 + IAI46_04125 0.33 +0.0
889,414 - IAI46_04125 0.33 -0.5
889,414 - IAI46_04125 0.33 -1.0
889,445 - IAI46_04125 0.37 +0.6
889,497 + IAI46_04125 0.43 +0.2
889,497 + IAI46_04125 0.43 +0.3
889,497 + IAI46_04125 0.43 +0.2
889,498 - IAI46_04125 0.44 +0.2
889,498 - IAI46_04125 0.44 -0.1
889,498 - IAI46_04125 0.44 +0.4
889,498 - IAI46_04125 0.44 +0.1
889,498 - IAI46_04125 0.44 +0.2
889,563 + IAI46_04125 0.52 -0.0
889,563 + IAI46_04125 0.52 -0.8
889,564 - IAI46_04125 0.52 -0.5
889,602 - IAI46_04125 0.57 +0.6
889,638 + IAI46_04125 0.61 +0.1
889,638 + IAI46_04125 0.61 +0.0
889,638 + IAI46_04125 0.61 +1.1
889,638 + IAI46_04125 0.61 +0.1
889,639 - IAI46_04125 0.61 +1.5
889,643 + IAI46_04125 0.62 -0.6
889,644 - IAI46_04125 0.62 +0.3
889,712 + IAI46_04125 0.70 -0.3
889,764 - IAI46_04125 0.77 -1.8
889,848 - IAI46_04125 0.88 +0.6
889,895 + +0.4
889,896 - +0.6
890,029 + +0.2
890,030 - +0.4
890,113 + +0.7
890,116 + +0.5
890,116 + +0.5
890,140 + -0.1
890,173 - IAI46_04130 0.12 +0.0
890,173 - IAI46_04130 0.12 -0.8
890,179 + IAI46_04130 0.12 -0.1
890,180 - IAI46_04130 0.12 -0.3
890,232 - IAI46_04130 0.16 -0.6
890,249 + IAI46_04130 0.17 -0.3
890,249 + IAI46_04130 0.17 -0.8
890,250 - IAI46_04130 0.17 +0.0
890,250 - IAI46_04130 0.17 +0.3
890,250 - IAI46_04130 0.17 +0.2
890,250 - IAI46_04130 0.17 -0.4
890,250 - IAI46_04130 0.17 +1.3
890,285 - IAI46_04130 0.20 -0.1
890,285 - IAI46_04130 0.20 +0.1
890,332 + IAI46_04130 0.23 +0.3
890,333 - IAI46_04130 0.23 -0.3
890,333 - IAI46_04130 0.23 +0.6
890,334 + IAI46_04130 0.23 -0.3
890,335 - IAI46_04130 0.24 +0.7
890,341 + IAI46_04130 0.24 +0.7
890,341 + IAI46_04130 0.24 +0.6
890,452 + IAI46_04130 0.32 +1.1
890,453 - IAI46_04130 0.32 -2.0
890,453 - IAI46_04130 0.32 -0.3
890,453 - IAI46_04130 0.32 -0.2
890,457 + IAI46_04130 0.32 -0.4
890,457 + IAI46_04130 0.32 -0.0
890,458 - IAI46_04130 0.32 -0.8
890,458 - IAI46_04130 0.32 +0.9
890,458 - IAI46_04130 0.32 +0.7
890,493 + IAI46_04130 0.35 +0.3
890,503 + IAI46_04130 0.36 +0.8
890,503 + IAI46_04130 0.36 -1.4
890,506 - IAI46_04130 0.36 +0.1
890,555 + IAI46_04130 0.39 +1.1
890,556 - IAI46_04130 0.39 +0.3
890,562 - IAI46_04130 0.40 +0.7
890,600 - IAI46_04130 0.43 -0.2
890,600 - IAI46_04130 0.43 -0.5
890,603 - IAI46_04130 0.43 +0.6
890,628 + IAI46_04130 0.45 +0.7
890,629 - IAI46_04130 0.45 +0.2
890,645 - IAI46_04130 0.46 +0.1
890,728 + IAI46_04130 0.52 -0.0
890,740 + IAI46_04130 0.53 -0.7
890,741 - IAI46_04130 0.53 +0.6
890,750 - IAI46_04130 0.53 -0.7
890,782 + IAI46_04130 0.56 +1.4
890,782 + IAI46_04130 0.56 +0.2
890,783 - IAI46_04130 0.56 +0.2
890,783 - IAI46_04130 0.56 +0.2
890,783 - IAI46_04130 0.56 +0.5
890,783 - IAI46_04130 0.56 +0.1
890,784 + IAI46_04130 0.56 +0.5
890,802 - IAI46_04130 0.57 +0.3
890,815 + IAI46_04130 0.58 -0.1
890,816 - IAI46_04130 0.58 +0.6
890,842 + IAI46_04130 0.60 +0.7
890,843 - IAI46_04130 0.60 +1.0
890,946 - IAI46_04130 0.68 +0.5

Or see this region's nucleotide sequence