Strain Fitness in Serratia liquefaciens MT49 around IAI46_04055

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04040 and IAI46_04045 are separated by 9 nucleotidesIAI46_04045 and IAI46_04050 are separated by 38 nucleotidesIAI46_04050 and IAI46_04055 are separated by 8 nucleotidesIAI46_04055 and IAI46_04060 overlap by 4 nucleotidesIAI46_04060 and IAI46_04065 overlap by 10 nucleotides IAI46_04040: IAI46_04040 - acyl carrier protein, at 873,752 to 874,012 _04040 IAI46_04045: IAI46_04045 - acyl carrier protein, at 874,022 to 874,273 _04045 IAI46_04050: IAI46_04050 - hypothetical protein, at 874,312 to 874,869 _04050 IAI46_04055: IAI46_04055 - acyl-CoA synthetase, at 874,878 to 876,209 _04055 IAI46_04060: IAI46_04060 - hydroxymyristoyl-ACP dehydratase, at 876,206 to 876,550 _04060 IAI46_04065: IAI46_04065 - glycosyltransferase family 2 protein, at 876,541 to 878,259 _04065 Position (kb) 874 875 876 877Strain fitness (log2 ratio) -2 -1 0 1 2at 873.963 kb on - strand, within IAI46_04040at 874.028 kb on - strandat 874.093 kb on + strand, within IAI46_04045at 874.115 kb on + strand, within IAI46_04045at 874.116 kb on - strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.131 kb on + strand, within IAI46_04045at 874.224 kb on + strand, within IAI46_04045at 874.272 kb on - strandat 874.272 kb on - strandat 874.272 kb on - strandat 874.284 kb on + strandat 874.358 kb on - strandat 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.432 kb on - strand, within IAI46_04050at 874.558 kb on + strand, within IAI46_04050at 874.559 kb on - strand, within IAI46_04050at 874.561 kb on + strand, within IAI46_04050at 874.583 kb on + strand, within IAI46_04050at 874.583 kb on + strand, within IAI46_04050at 874.584 kb on - strand, within IAI46_04050at 874.647 kb on + strand, within IAI46_04050at 874.648 kb on - strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.684 kb on + strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.685 kb on - strand, within IAI46_04050at 874.687 kb on - strand, within IAI46_04050at 874.687 kb on - strand, within IAI46_04050at 874.768 kb on - strand, within IAI46_04050at 874.786 kb on + strand, within IAI46_04050at 874.787 kb on - strand, within IAI46_04050at 874.804 kb on + strand, within IAI46_04050at 874.805 kb on - strand, within IAI46_04050at 874.831 kb on - strandat 874.841 kb on + strandat 874.942 kb on + strandat 874.942 kb on + strandat 874.943 kb on - strandat 874.943 kb on - strandat 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.036 kb on + strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.037 kb on - strand, within IAI46_04055at 875.040 kb on + strand, within IAI46_04055at 875.041 kb on - strand, within IAI46_04055at 875.041 kb on - strand, within IAI46_04055at 875.073 kb on + strand, within IAI46_04055at 875.074 kb on - strand, within IAI46_04055at 875.074 kb on - strand, within IAI46_04055at 875.074 kb on - strand, within IAI46_04055at 875.074 kb on - strand, within IAI46_04055at 875.117 kb on + strand, within IAI46_04055at 875.117 kb on + strand, within IAI46_04055at 875.118 kb on - strand, within IAI46_04055at 875.142 kb on + strand, within IAI46_04055at 875.220 kb on - strand, within IAI46_04055at 875.263 kb on - strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.475 kb on + strand, within IAI46_04055at 875.650 kb on + strand, within IAI46_04055at 875.667 kb on + strand, within IAI46_04055at 875.752 kb on + strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.889 kb on - strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.938 kb on + strand, within IAI46_04055at 875.939 kb on - strand, within IAI46_04055at 876.180 kb on + strandat 876.181 kb on - strandat 876.191 kb on - strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.541 kb on - strandat 876.576 kb on + strandat 876.588 kb on + strandat 876.634 kb on + strandat 876.803 kb on - strand, within IAI46_04065at 876.852 kb on + strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.854 kb on + strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.955 kb on + strand, within IAI46_04065at 876.956 kb on - strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.002 kb on - strand, within IAI46_04065at 877.117 kb on + strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.203 kb on + strand, within IAI46_04065

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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873,963 - IAI46_04040 0.81 -0.3
874,028 - -0.5
874,093 + IAI46_04045 0.28 +0.6
874,115 + IAI46_04045 0.37 +1.8
874,116 - IAI46_04045 0.37 -0.6
874,131 + IAI46_04045 0.43 +0.0
874,131 + IAI46_04045 0.43 -0.7
874,131 + IAI46_04045 0.43 +0.8
874,224 + IAI46_04045 0.80 +0.1
874,272 - -0.1
874,272 - +0.1
874,272 - +0.9
874,284 + -0.2
874,358 - -0.4
874,432 - IAI46_04050 0.22 -0.6
874,432 - IAI46_04050 0.22 -0.6
874,432 - IAI46_04050 0.22 +0.2
874,432 - IAI46_04050 0.22 +0.2
874,558 + IAI46_04050 0.44 +0.3
874,559 - IAI46_04050 0.44 -0.0
874,561 + IAI46_04050 0.45 +0.5
874,583 + IAI46_04050 0.49 +0.3
874,583 + IAI46_04050 0.49 +0.3
874,584 - IAI46_04050 0.49 +1.4
874,647 + IAI46_04050 0.60 +0.6
874,648 - IAI46_04050 0.60 +0.5
874,684 + IAI46_04050 0.67 -1.1
874,684 + IAI46_04050 0.67 +0.6
874,684 + IAI46_04050 0.67 +0.2
874,684 + IAI46_04050 0.67 +0.3
874,685 - IAI46_04050 0.67 -1.1
874,685 - IAI46_04050 0.67 +0.5
874,685 - IAI46_04050 0.67 +0.5
874,685 - IAI46_04050 0.67 +0.3
874,687 - IAI46_04050 0.67 +0.6
874,687 - IAI46_04050 0.67 +0.1
874,768 - IAI46_04050 0.82 -0.5
874,786 + IAI46_04050 0.85 +0.2
874,787 - IAI46_04050 0.85 +0.7
874,804 + IAI46_04050 0.88 +0.2
874,805 - IAI46_04050 0.88 +1.4
874,831 - +0.5
874,841 + -0.2
874,942 + +0.4
874,942 + +0.8
874,943 - +0.0
874,943 - -0.1
875,036 + IAI46_04055 0.12 -0.3
875,036 + IAI46_04055 0.12 -0.8
875,036 + IAI46_04055 0.12 +0.4
875,036 + IAI46_04055 0.12 +0.5
875,036 + IAI46_04055 0.12 +0.2
875,036 + IAI46_04055 0.12 +0.4
875,036 + IAI46_04055 0.12 -0.3
875,037 - IAI46_04055 0.12 +1.9
875,037 - IAI46_04055 0.12 +1.5
875,037 - IAI46_04055 0.12 +0.6
875,037 - IAI46_04055 0.12 +1.2
875,037 - IAI46_04055 0.12 -0.0
875,037 - IAI46_04055 0.12 +0.0
875,040 + IAI46_04055 0.12 -1.0
875,041 - IAI46_04055 0.12 +0.0
875,041 - IAI46_04055 0.12 -1.0
875,073 + IAI46_04055 0.15 +1.1
875,074 - IAI46_04055 0.15 +0.1
875,074 - IAI46_04055 0.15 -0.7
875,074 - IAI46_04055 0.15 -0.4
875,074 - IAI46_04055 0.15 -0.3
875,117 + IAI46_04055 0.18 -0.8
875,117 + IAI46_04055 0.18 +1.6
875,118 - IAI46_04055 0.18 -0.5
875,142 + IAI46_04055 0.20 +1.1
875,220 - IAI46_04055 0.26 +0.2
875,263 - IAI46_04055 0.29 -0.4
875,402 + IAI46_04055 0.39 +0.2
875,402 + IAI46_04055 0.39 +0.2
875,402 + IAI46_04055 0.39 +0.2
875,402 + IAI46_04055 0.39 +0.0
875,402 + IAI46_04055 0.39 +0.2
875,403 - IAI46_04055 0.39 +0.7
875,403 - IAI46_04055 0.39 +0.6
875,403 - IAI46_04055 0.39 -0.3
875,403 - IAI46_04055 0.39 -0.1
875,403 - IAI46_04055 0.39 +0.1
875,403 - IAI46_04055 0.39 -0.9
875,403 - IAI46_04055 0.39 +0.4
875,403 - IAI46_04055 0.39 +0.3
875,403 - IAI46_04055 0.39 -0.1
875,406 + IAI46_04055 0.40 +0.2
875,406 + IAI46_04055 0.40 +0.3
875,406 + IAI46_04055 0.40 -0.9
875,406 + IAI46_04055 0.40 +0.9
875,406 + IAI46_04055 0.40 +0.0
875,406 + IAI46_04055 0.40 -1.1
875,407 - IAI46_04055 0.40 -0.1
875,407 - IAI46_04055 0.40 -0.1
875,407 - IAI46_04055 0.40 -0.7
875,475 + IAI46_04055 0.45 -0.1
875,650 + IAI46_04055 0.58 +0.5
875,667 + IAI46_04055 0.59 +0.1
875,752 + IAI46_04055 0.66 +0.3
875,867 - IAI46_04055 0.74 +0.9
875,867 - IAI46_04055 0.74 +1.3
875,867 - IAI46_04055 0.74 -0.3
875,889 - IAI46_04055 0.76 +0.1
875,891 + IAI46_04055 0.76 +2.1
875,891 + IAI46_04055 0.76 -0.5
875,891 + IAI46_04055 0.76 -0.4
875,892 - IAI46_04055 0.76 +0.3
875,892 - IAI46_04055 0.76 -0.3
875,892 - IAI46_04055 0.76 -0.3
875,938 + IAI46_04055 0.80 -0.7
875,939 - IAI46_04055 0.80 -1.1
876,180 + +0.5
876,181 - +0.3
876,191 - +0.6
876,205 + +0.2
876,205 + -1.0
876,205 + +0.7
876,206 - -0.2
876,206 - -0.2
876,206 - +0.4
876,359 + IAI46_04060 0.44 +0.1
876,359 + IAI46_04060 0.44 +0.6
876,359 + IAI46_04060 0.44 +0.1
876,359 + IAI46_04060 0.44 -0.5
876,359 + IAI46_04060 0.44 -0.3
876,360 - IAI46_04060 0.45 -2.1
876,360 - IAI46_04060 0.45 +0.3
876,541 - -0.1
876,576 + -0.7
876,588 + -0.0
876,634 + -1.5
876,803 - IAI46_04065 0.15 -1.6
876,852 + IAI46_04065 0.18 -0.2
876,853 - IAI46_04065 0.18 +1.0
876,853 - IAI46_04065 0.18 +0.5
876,854 + IAI46_04065 0.18 +1.1
876,855 - IAI46_04065 0.18 +0.4
876,855 - IAI46_04065 0.18 -0.6
876,855 - IAI46_04065 0.18 +0.2
876,855 - IAI46_04065 0.18 -0.5
876,916 + IAI46_04065 0.22 +0.7
876,916 + IAI46_04065 0.22 +0.3
876,916 + IAI46_04065 0.22 -0.4
876,916 + IAI46_04065 0.22 -1.5
876,916 + IAI46_04065 0.22 +0.0
876,946 + IAI46_04065 0.24 +0.3
876,946 + IAI46_04065 0.24 -1.6
876,955 + IAI46_04065 0.24 -0.9
876,956 - IAI46_04065 0.24 -0.0
877,001 + IAI46_04065 0.27 -0.0
877,001 + IAI46_04065 0.27 -0.0
877,002 - IAI46_04065 0.27 -0.0
877,117 + IAI46_04065 0.34 -0.0
877,118 - IAI46_04065 0.34 +1.6
877,118 - IAI46_04065 0.34 +0.0
877,118 - IAI46_04065 0.34 +0.6
877,118 - IAI46_04065 0.34 -0.3
877,203 + IAI46_04065 0.39 -2.7

Or see this region's nucleotide sequence