Strain Fitness in Serratia liquefaciens MT49 around IAI46_03820

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03815 and IAI46_03820 are separated by 14 nucleotidesIAI46_03820 and IAI46_03825 are separated by 153 nucleotidesIAI46_03825 and IAI46_03830 are separated by 27 nucleotides IAI46_03815: IAI46_03815 - glycoside hydrolase family 1 protein, at 831,504 to 832,889 _03815 IAI46_03820: IAI46_03820 - transcriptional regulator ChbR, at 832,904 to 833,752 _03820 IAI46_03825: IAI46_03825 - chitin disaccharide deacetylase, at 833,906 to 834,667 _03825 IAI46_03830: IAI46_03830 - MFS transporter, at 834,695 to 836,089 _03830 Position (kb) 832 833 834Strain fitness (log2 ratio) -2 -1 0 1 2at 831.930 kb on + strand, within IAI46_03815at 831.930 kb on + strand, within IAI46_03815at 831.930 kb on + strand, within IAI46_03815at 831.931 kb on - strand, within IAI46_03815at 831.931 kb on - strand, within IAI46_03815at 831.931 kb on - strand, within IAI46_03815at 831.989 kb on + strand, within IAI46_03815at 832.026 kb on + strand, within IAI46_03815at 832.044 kb on + strand, within IAI46_03815at 832.045 kb on - strand, within IAI46_03815at 832.045 kb on - strand, within IAI46_03815at 832.065 kb on - strand, within IAI46_03815at 832.161 kb on - strand, within IAI46_03815at 832.161 kb on - strand, within IAI46_03815at 832.182 kb on + strand, within IAI46_03815at 832.183 kb on - strand, within IAI46_03815at 832.300 kb on + strand, within IAI46_03815at 832.373 kb on + strand, within IAI46_03815at 832.373 kb on + strand, within IAI46_03815at 832.390 kb on - strand, within IAI46_03815at 832.390 kb on - strand, within IAI46_03815at 832.390 kb on - strand, within IAI46_03815at 832.393 kb on - strand, within IAI46_03815at 832.410 kb on - strand, within IAI46_03815at 832.470 kb on + strand, within IAI46_03815at 832.470 kb on + strand, within IAI46_03815at 832.471 kb on - strand, within IAI46_03815at 832.471 kb on - strand, within IAI46_03815at 832.473 kb on + strand, within IAI46_03815at 832.474 kb on - strand, within IAI46_03815at 832.474 kb on - strand, within IAI46_03815at 832.474 kb on - strand, within IAI46_03815at 832.474 kb on - strand, within IAI46_03815at 832.536 kb on + strand, within IAI46_03815at 832.536 kb on + strand, within IAI46_03815at 832.537 kb on - strand, within IAI46_03815at 832.566 kb on + strand, within IAI46_03815at 832.584 kb on + strand, within IAI46_03815at 832.585 kb on - strand, within IAI46_03815at 832.586 kb on + strand, within IAI46_03815at 832.587 kb on - strand, within IAI46_03815at 832.673 kb on + strand, within IAI46_03815at 832.773 kb on - strandat 832.779 kb on + strandat 832.848 kb on + strandat 832.942 kb on + strandat 832.943 kb on - strandat 832.998 kb on - strand, within IAI46_03820at 832.998 kb on - strand, within IAI46_03820at 832.999 kb on + strand, within IAI46_03820at 833.000 kb on - strand, within IAI46_03820at 833.039 kb on + strand, within IAI46_03820at 833.039 kb on + strand, within IAI46_03820at 833.039 kb on + strand, within IAI46_03820at 833.039 kb on + strand, within IAI46_03820at 833.039 kb on + strand, within IAI46_03820at 833.040 kb on - strand, within IAI46_03820at 833.040 kb on - strand, within IAI46_03820at 833.040 kb on - strand, within IAI46_03820at 833.042 kb on + strand, within IAI46_03820at 833.042 kb on + strand, within IAI46_03820at 833.042 kb on + strand, within IAI46_03820at 833.043 kb on - strand, within IAI46_03820at 833.043 kb on - strand, within IAI46_03820at 833.159 kb on + strand, within IAI46_03820at 833.223 kb on - strand, within IAI46_03820at 833.223 kb on - strand, within IAI46_03820at 833.223 kb on - strand, within IAI46_03820at 833.291 kb on + strand, within IAI46_03820at 833.291 kb on + strand, within IAI46_03820at 833.292 kb on - strand, within IAI46_03820at 833.292 kb on - strand, within IAI46_03820at 833.292 kb on - strand, within IAI46_03820at 833.366 kb on + strand, within IAI46_03820at 833.366 kb on + strand, within IAI46_03820at 833.366 kb on + strand, within IAI46_03820at 833.367 kb on - strand, within IAI46_03820at 833.390 kb on + strand, within IAI46_03820at 833.390 kb on + strand, within IAI46_03820at 833.390 kb on + strand, within IAI46_03820at 833.392 kb on + strand, within IAI46_03820at 833.393 kb on - strand, within IAI46_03820at 833.393 kb on - strand, within IAI46_03820at 833.393 kb on - strand, within IAI46_03820at 833.461 kb on + strand, within IAI46_03820at 833.462 kb on - strand, within IAI46_03820at 833.494 kb on + strand, within IAI46_03820at 833.495 kb on - strand, within IAI46_03820at 833.525 kb on + strand, within IAI46_03820at 833.526 kb on - strand, within IAI46_03820at 833.526 kb on - strand, within IAI46_03820at 833.526 kb on - strand, within IAI46_03820at 833.549 kb on + strand, within IAI46_03820at 833.549 kb on + strand, within IAI46_03820at 833.550 kb on - strand, within IAI46_03820at 833.550 kb on - strand, within IAI46_03820at 833.550 kb on - strand, within IAI46_03820at 833.552 kb on + strand, within IAI46_03820at 833.553 kb on - strand, within IAI46_03820at 833.557 kb on + strand, within IAI46_03820at 833.627 kb on + strand, within IAI46_03820at 833.627 kb on + strand, within IAI46_03820at 833.628 kb on - strand, within IAI46_03820at 833.681 kb on - strandat 833.692 kb on + strandat 833.720 kb on - strandat 833.724 kb on - strandat 833.739 kb on - strandat 833.772 kb on + strandat 833.822 kb on - strandat 833.835 kb on + strandat 833.916 kb on + strandat 833.922 kb on + strandat 833.923 kb on - strandat 833.923 kb on - strandat 833.964 kb on - strandat 833.964 kb on - strandat 833.988 kb on - strand, within IAI46_03825at 834.023 kb on - strand, within IAI46_03825at 834.033 kb on + strand, within IAI46_03825at 834.033 kb on + strand, within IAI46_03825at 834.033 kb on + strand, within IAI46_03825at 834.034 kb on - strand, within IAI46_03825at 834.034 kb on - strand, within IAI46_03825at 834.271 kb on + strand, within IAI46_03825at 834.295 kb on + strand, within IAI46_03825at 834.295 kb on + strand, within IAI46_03825at 834.295 kb on + strand, within IAI46_03825at 834.295 kb on + strand, within IAI46_03825at 834.296 kb on - strand, within IAI46_03825at 834.296 kb on - strand, within IAI46_03825at 834.296 kb on - strand, within IAI46_03825at 834.312 kb on - strand, within IAI46_03825at 834.358 kb on + strand, within IAI46_03825at 834.388 kb on + strand, within IAI46_03825at 834.388 kb on + strand, within IAI46_03825at 834.437 kb on + strand, within IAI46_03825at 834.437 kb on + strand, within IAI46_03825at 834.547 kb on + strand, within IAI46_03825at 834.548 kb on - strand, within IAI46_03825at 834.563 kb on + strand, within IAI46_03825at 834.563 kb on + strand, within IAI46_03825at 834.678 kb on + strandat 834.678 kb on + strandat 834.679 kb on - strandat 834.679 kb on - strandat 834.679 kb on - strandat 834.680 kb on + strandat 834.681 kb on - strandat 834.681 kb on - strandat 834.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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831,930 + IAI46_03815 0.31 +0.3
831,930 + IAI46_03815 0.31 +0.5
831,930 + IAI46_03815 0.31 +0.8
831,931 - IAI46_03815 0.31 -0.7
831,931 - IAI46_03815 0.31 -0.5
831,931 - IAI46_03815 0.31 -2.2
831,989 + IAI46_03815 0.35 +0.3
832,026 + IAI46_03815 0.38 +0.6
832,044 + IAI46_03815 0.39 +0.3
832,045 - IAI46_03815 0.39 +0.6
832,045 - IAI46_03815 0.39 +0.1
832,065 - IAI46_03815 0.40 -0.0
832,161 - IAI46_03815 0.47 -0.8
832,161 - IAI46_03815 0.47 +0.2
832,182 + IAI46_03815 0.49 +0.2
832,183 - IAI46_03815 0.49 -0.3
832,300 + IAI46_03815 0.57 +0.5
832,373 + IAI46_03815 0.63 +0.2
832,373 + IAI46_03815 0.63 +0.1
832,390 - IAI46_03815 0.64 +1.1
832,390 - IAI46_03815 0.64 +0.8
832,390 - IAI46_03815 0.64 +0.2
832,393 - IAI46_03815 0.64 -0.2
832,410 - IAI46_03815 0.65 +0.7
832,470 + IAI46_03815 0.70 -0.0
832,470 + IAI46_03815 0.70 -2.0
832,471 - IAI46_03815 0.70 +0.5
832,471 - IAI46_03815 0.70 -0.7
832,473 + IAI46_03815 0.70 +0.5
832,474 - IAI46_03815 0.70 -0.1
832,474 - IAI46_03815 0.70 +0.3
832,474 - IAI46_03815 0.70 +0.4
832,474 - IAI46_03815 0.70 -0.7
832,536 + IAI46_03815 0.74 -0.6
832,536 + IAI46_03815 0.74 +0.1
832,537 - IAI46_03815 0.75 +1.9
832,566 + IAI46_03815 0.77 +0.5
832,584 + IAI46_03815 0.78 +0.7
832,585 - IAI46_03815 0.78 -0.3
832,586 + IAI46_03815 0.78 +0.5
832,587 - IAI46_03815 0.78 +1.1
832,673 + IAI46_03815 0.84 +0.6
832,773 - -2.5
832,779 + -1.2
832,848 + +0.3
832,942 + +0.5
832,943 - +1.5
832,998 - IAI46_03820 0.11 +1.0
832,998 - IAI46_03820 0.11 -0.4
832,999 + IAI46_03820 0.11 +0.0
833,000 - IAI46_03820 0.11 +0.4
833,039 + IAI46_03820 0.16 +0.1
833,039 + IAI46_03820 0.16 -0.7
833,039 + IAI46_03820 0.16 +0.8
833,039 + IAI46_03820 0.16 -0.8
833,039 + IAI46_03820 0.16 -0.4
833,040 - IAI46_03820 0.16 +1.0
833,040 - IAI46_03820 0.16 -0.1
833,040 - IAI46_03820 0.16 +0.6
833,042 + IAI46_03820 0.16 +0.5
833,042 + IAI46_03820 0.16 -0.4
833,042 + IAI46_03820 0.16 -0.1
833,043 - IAI46_03820 0.16 -1.6
833,043 - IAI46_03820 0.16 -0.5
833,159 + IAI46_03820 0.30 +0.3
833,223 - IAI46_03820 0.38 +0.8
833,223 - IAI46_03820 0.38 -0.3
833,223 - IAI46_03820 0.38 -0.3
833,291 + IAI46_03820 0.46 +1.0
833,291 + IAI46_03820 0.46 +0.3
833,292 - IAI46_03820 0.46 +0.4
833,292 - IAI46_03820 0.46 -0.7
833,292 - IAI46_03820 0.46 -0.3
833,366 + IAI46_03820 0.54 -0.3
833,366 + IAI46_03820 0.54 -0.2
833,366 + IAI46_03820 0.54 -0.6
833,367 - IAI46_03820 0.55 -0.5
833,390 + IAI46_03820 0.57 -2.1
833,390 + IAI46_03820 0.57 +0.4
833,390 + IAI46_03820 0.57 -0.1
833,392 + IAI46_03820 0.57 -0.9
833,393 - IAI46_03820 0.58 +1.5
833,393 - IAI46_03820 0.58 -0.4
833,393 - IAI46_03820 0.58 +0.5
833,461 + IAI46_03820 0.66 -0.3
833,462 - IAI46_03820 0.66 -0.1
833,494 + IAI46_03820 0.69 -0.1
833,495 - IAI46_03820 0.70 +0.8
833,525 + IAI46_03820 0.73 +0.5
833,526 - IAI46_03820 0.73 -1.1
833,526 - IAI46_03820 0.73 -2.1
833,526 - IAI46_03820 0.73 +0.1
833,549 + IAI46_03820 0.76 -0.5
833,549 + IAI46_03820 0.76 -0.1
833,550 - IAI46_03820 0.76 +1.5
833,550 - IAI46_03820 0.76 +0.7
833,550 - IAI46_03820 0.76 -0.8
833,552 + IAI46_03820 0.76 -0.3
833,553 - IAI46_03820 0.76 +0.0
833,557 + IAI46_03820 0.77 -0.5
833,627 + IAI46_03820 0.85 +2.1
833,627 + IAI46_03820 0.85 +1.4
833,628 - IAI46_03820 0.85 -0.5
833,681 - -0.7
833,692 + +1.1
833,720 - +0.5
833,724 - +0.7
833,739 - +0.6
833,772 + -0.2
833,822 - +0.7
833,835 + +1.1
833,916 + +1.4
833,922 + -1.2
833,923 - +0.1
833,923 - +0.9
833,964 - -1.4
833,964 - -1.3
833,988 - IAI46_03825 0.11 -0.2
834,023 - IAI46_03825 0.15 +0.4
834,033 + IAI46_03825 0.17 +0.2
834,033 + IAI46_03825 0.17 +0.5
834,033 + IAI46_03825 0.17 +0.2
834,034 - IAI46_03825 0.17 -1.3
834,034 - IAI46_03825 0.17 -1.3
834,271 + IAI46_03825 0.48 -1.0
834,295 + IAI46_03825 0.51 +0.6
834,295 + IAI46_03825 0.51 +0.3
834,295 + IAI46_03825 0.51 +0.5
834,295 + IAI46_03825 0.51 +0.0
834,296 - IAI46_03825 0.51 -0.1
834,296 - IAI46_03825 0.51 -0.3
834,296 - IAI46_03825 0.51 -0.9
834,312 - IAI46_03825 0.53 -0.1
834,358 + IAI46_03825 0.59 -0.3
834,388 + IAI46_03825 0.63 -0.4
834,388 + IAI46_03825 0.63 +0.2
834,437 + IAI46_03825 0.70 -0.2
834,437 + IAI46_03825 0.70 +0.6
834,547 + IAI46_03825 0.84 -0.2
834,548 - IAI46_03825 0.84 -0.6
834,563 + IAI46_03825 0.86 +0.6
834,563 + IAI46_03825 0.86 +0.1
834,678 + -0.2
834,678 + +0.2
834,679 - -1.3
834,679 - +0.3
834,679 - +0.5
834,680 + +0.1
834,681 - +0.2
834,681 - -0.3
834,681 - -1.0

Or see this region's nucleotide sequence