Strain Fitness in Serratia liquefaciens MT49 around IAI46_03745

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03735 and IAI46_03740 overlap by 17 nucleotidesIAI46_03740 and IAI46_03745 are separated by 101 nucleotidesIAI46_03745 and IAI46_03750 are separated by 406 nucleotidesIAI46_03750 and IAI46_03755 are separated by 3 nucleotides IAI46_03735: IAI46_03735 - amino acid ABC transporter ATP-binding protein, at 814,171 to 814,893 _03735 IAI46_03740: IAI46_03740 - amino acid ABC transporter permease, at 814,877 to 815,596 _03740 IAI46_03745: IAI46_03745 - basic amino acid ABC transporter substrate-binding protein, at 815,698 to 816,468 _03745 IAI46_03750: IAI46_03750 - cell division protein FtsB, at 816,875 to 817,195 _03750 IAI46_03755: IAI46_03755 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 817,199 to 817,906 _03755 Position (kb) 815 816 817Strain fitness (log2 ratio) -2 -1 0 1 2at 814.770 kb on + strand, within IAI46_03735at 814.777 kb on - strand, within IAI46_03735at 814.777 kb on - strand, within IAI46_03735at 814.878 kb on + strandat 814.878 kb on + strandat 814.879 kb on - strandat 814.882 kb on + strandat 814.883 kb on - strandat 814.883 kb on - strandat 814.957 kb on - strand, within IAI46_03740at 814.957 kb on - strand, within IAI46_03740at 814.989 kb on + strand, within IAI46_03740at 814.990 kb on - strand, within IAI46_03740at 814.998 kb on + strand, within IAI46_03740at 814.998 kb on + strand, within IAI46_03740at 815.203 kb on + strand, within IAI46_03740at 815.203 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.258 kb on - strand, within IAI46_03740at 815.258 kb on - strand, within IAI46_03740at 815.365 kb on + strand, within IAI46_03740at 815.366 kb on - strand, within IAI46_03740at 815.419 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.466 kb on + strand, within IAI46_03740at 815.560 kb on + strandat 815.560 kb on + strandat 815.560 kb on + strandat 815.561 kb on - strandat 815.561 kb on - strandat 815.562 kb on - strandat 815.622 kb on - strandat 815.622 kb on - strandat 815.622 kb on - strandat 815.656 kb on + strandat 815.699 kb on + strandat 815.745 kb on - strandat 815.756 kb on + strandat 815.756 kb on + strandat 815.844 kb on - strand, within IAI46_03745at 815.904 kb on + strand, within IAI46_03745at 815.906 kb on + strand, within IAI46_03745at 815.906 kb on + strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.947 kb on - strand, within IAI46_03745at 815.957 kb on + strand, within IAI46_03745at 815.983 kb on - strand, within IAI46_03745at 816.020 kb on - strand, within IAI46_03745at 816.062 kb on - strand, within IAI46_03745at 816.062 kb on - strand, within IAI46_03745at 816.244 kb on - strand, within IAI46_03745at 816.259 kb on - strand, within IAI46_03745at 816.310 kb on - strand, within IAI46_03745at 816.314 kb on - strand, within IAI46_03745at 816.316 kb on - strand, within IAI46_03745at 816.354 kb on - strand, within IAI46_03745at 816.365 kb on + strand, within IAI46_03745at 816.365 kb on + strand, within IAI46_03745at 816.366 kb on - strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.390 kb on - strand, within IAI46_03745at 816.393 kb on + strandat 816.393 kb on + strandat 816.393 kb on + strandat 816.394 kb on - strandat 816.454 kb on + strandat 816.463 kb on - strandat 816.516 kb on + strandat 816.561 kb on + strandat 816.590 kb on - strandat 816.762 kb on + strandat 816.764 kb on + strandat 816.764 kb on + strandat 816.765 kb on - strandat 816.778 kb on + strandat 816.778 kb on + strandat 816.786 kb on + strandat 816.786 kb on + strandat 817.180 kb on + strandat 817.180 kb on + strandat 817.180 kb on + strandat 817.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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814,770 + IAI46_03735 0.83 -1.7
814,777 - IAI46_03735 0.84 -0.1
814,777 - IAI46_03735 0.84 +0.3
814,878 + +0.7
814,878 + +0.9
814,879 - -1.1
814,882 + -0.3
814,883 - +0.3
814,883 - -0.1
814,957 - IAI46_03740 0.11 -0.3
814,957 - IAI46_03740 0.11 +0.8
814,989 + IAI46_03740 0.16 +0.5
814,990 - IAI46_03740 0.16 -0.6
814,998 + IAI46_03740 0.17 +0.5
814,998 + IAI46_03740 0.17 +0.1
815,203 + IAI46_03740 0.45 +1.7
815,203 + IAI46_03740 0.45 -1.5
815,238 + IAI46_03740 0.50 +0.1
815,238 + IAI46_03740 0.50 -1.3
815,238 + IAI46_03740 0.50 +0.4
815,238 + IAI46_03740 0.50 +0.0
815,238 + IAI46_03740 0.50 +0.2
815,238 + IAI46_03740 0.50 -0.4
815,239 - IAI46_03740 0.50 -0.7
815,239 - IAI46_03740 0.50 +0.4
815,239 - IAI46_03740 0.50 +0.8
815,258 - IAI46_03740 0.53 -0.0
815,258 - IAI46_03740 0.53 +0.2
815,365 + IAI46_03740 0.68 +0.3
815,366 - IAI46_03740 0.68 -0.3
815,419 + IAI46_03740 0.75 -0.3
815,439 + IAI46_03740 0.78 +0.7
815,439 + IAI46_03740 0.78 +0.4
815,439 + IAI46_03740 0.78 -0.1
815,440 - IAI46_03740 0.78 +1.1
815,440 - IAI46_03740 0.78 +0.5
815,440 - IAI46_03740 0.78 +1.1
815,440 - IAI46_03740 0.78 +2.6
815,466 + IAI46_03740 0.82 +1.6
815,560 + -0.1
815,560 + +0.4
815,560 + -0.4
815,561 - +0.6
815,561 - +0.6
815,562 - +0.6
815,622 - +0.9
815,622 - +0.7
815,622 - -0.1
815,656 + -0.2
815,699 + -0.0
815,745 - -0.5
815,756 + -0.5
815,756 + -0.7
815,844 - IAI46_03745 0.19 +0.7
815,904 + IAI46_03745 0.27 -0.0
815,906 + IAI46_03745 0.27 +0.5
815,906 + IAI46_03745 0.27 -0.3
815,907 - IAI46_03745 0.27 -0.3
815,907 - IAI46_03745 0.27 -0.8
815,907 - IAI46_03745 0.27 +2.1
815,907 - IAI46_03745 0.27 +0.2
815,947 - IAI46_03745 0.32 +0.9
815,957 + IAI46_03745 0.34 +0.1
815,983 - IAI46_03745 0.37 +0.1
816,020 - IAI46_03745 0.42 -1.2
816,062 - IAI46_03745 0.47 -0.5
816,062 - IAI46_03745 0.47 +0.4
816,244 - IAI46_03745 0.71 +0.1
816,259 - IAI46_03745 0.73 -1.6
816,310 - IAI46_03745 0.79 +0.1
816,314 - IAI46_03745 0.80 +0.6
816,316 - IAI46_03745 0.80 +1.2
816,354 - IAI46_03745 0.85 -1.9
816,365 + IAI46_03745 0.87 +0.5
816,365 + IAI46_03745 0.87 +0.0
816,366 - IAI46_03745 0.87 -0.3
816,389 + IAI46_03745 0.90 -0.4
816,389 + IAI46_03745 0.90 -0.7
816,389 + IAI46_03745 0.90 +1.3
816,389 + IAI46_03745 0.90 -0.4
816,389 + IAI46_03745 0.90 -0.5
816,390 - IAI46_03745 0.90 -0.6
816,393 + +0.2
816,393 + -0.3
816,393 + +0.1
816,394 - +0.8
816,454 + +0.4
816,463 - +0.5
816,516 + +0.1
816,561 + -1.8
816,590 - +0.6
816,762 + -0.2
816,764 + -0.2
816,764 + +2.0
816,765 - +0.0
816,778 + +0.0
816,778 + +0.8
816,786 + +0.8
816,786 + +0.0
817,180 + -0.6
817,180 + -1.9
817,180 + +0.8
817,185 + +0.1

Or see this region's nucleotide sequence