Strain Fitness in Serratia liquefaciens MT49 around IAI46_03135

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03130 and IAI46_03135 are separated by 90 nucleotidesIAI46_03135 and IAI46_03140 are separated by 20 nucleotides IAI46_03130: IAI46_03130 - isocyanide synthase family protein, at 670,140 to 671,105 _03130 IAI46_03135: IAI46_03135 - TauD/TfdA family dioxygenase, at 671,196 to 672,059 _03135 IAI46_03140: IAI46_03140 - glycosyltransferase, at 672,080 to 673,339 _03140 Position (kb) 671 672 673Strain fitness (log2 ratio) -2 -1 0 1 2at 670.286 kb on + strand, within IAI46_03130at 670.316 kb on - strand, within IAI46_03130at 670.346 kb on + strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.350 kb on - strand, within IAI46_03130at 670.391 kb on - strand, within IAI46_03130at 670.407 kb on - strand, within IAI46_03130at 670.434 kb on + strand, within IAI46_03130at 670.434 kb on + strand, within IAI46_03130at 670.455 kb on - strand, within IAI46_03130at 670.455 kb on - strand, within IAI46_03130at 670.659 kb on + strand, within IAI46_03130at 670.747 kb on - strand, within IAI46_03130at 670.771 kb on - strand, within IAI46_03130at 670.924 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.934 kb on + strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 670.935 kb on - strand, within IAI46_03130at 671.005 kb on + strand, within IAI46_03130at 671.103 kb on + strandat 671.116 kb on + strandat 671.116 kb on + strandat 671.117 kb on - strandat 671.235 kb on - strandat 671.471 kb on + strand, within IAI46_03135at 671.472 kb on - strand, within IAI46_03135at 671.488 kb on - strand, within IAI46_03135at 671.488 kb on - strand, within IAI46_03135at 671.488 kb on - strand, within IAI46_03135at 671.514 kb on + strand, within IAI46_03135at 671.514 kb on + strand, within IAI46_03135at 671.514 kb on + strand, within IAI46_03135at 671.514 kb on + strand, within IAI46_03135at 671.515 kb on - strand, within IAI46_03135at 671.515 kb on - strand, within IAI46_03135at 671.515 kb on - strand, within IAI46_03135at 671.515 kb on - strand, within IAI46_03135at 671.516 kb on + strand, within IAI46_03135at 671.555 kb on - strand, within IAI46_03135at 671.588 kb on + strand, within IAI46_03135at 671.588 kb on + strand, within IAI46_03135at 671.589 kb on - strand, within IAI46_03135at 671.589 kb on - strand, within IAI46_03135at 671.589 kb on - strand, within IAI46_03135at 671.668 kb on - strand, within IAI46_03135at 671.673 kb on - strand, within IAI46_03135at 671.691 kb on + strand, within IAI46_03135at 671.757 kb on + strand, within IAI46_03135at 671.758 kb on - strand, within IAI46_03135at 671.871 kb on + strand, within IAI46_03135at 671.872 kb on - strand, within IAI46_03135at 671.872 kb on - strand, within IAI46_03135at 671.886 kb on + strand, within IAI46_03135at 671.886 kb on + strand, within IAI46_03135at 671.889 kb on + strand, within IAI46_03135at 671.889 kb on + strand, within IAI46_03135at 671.930 kb on + strand, within IAI46_03135at 671.930 kb on + strand, within IAI46_03135at 671.931 kb on - strand, within IAI46_03135at 671.986 kb on + strandat 671.999 kb on + strandat 671.999 kb on + strandat 671.999 kb on + strandat 672.000 kb on - strandat 672.000 kb on - strandat 672.001 kb on + strandat 672.001 kb on + strandat 672.001 kb on + strandat 672.001 kb on + strandat 672.001 kb on + strandat 672.002 kb on - strandat 672.057 kb on + strandat 672.065 kb on - strandat 672.065 kb on - strandat 672.073 kb on + strandat 672.073 kb on + strandat 672.073 kb on + strandat 672.073 kb on + strandat 672.410 kb on + strand, within IAI46_03140at 672.429 kb on + strand, within IAI46_03140at 672.558 kb on + strand, within IAI46_03140at 672.558 kb on + strand, within IAI46_03140at 672.558 kb on + strand, within IAI46_03140at 672.559 kb on - strand, within IAI46_03140at 672.559 kb on - strand, within IAI46_03140at 672.559 kb on - strand, within IAI46_03140at 672.767 kb on - strand, within IAI46_03140at 672.767 kb on - strand, within IAI46_03140at 672.767 kb on - strand, within IAI46_03140at 672.892 kb on - strand, within IAI46_03140at 672.892 kb on - strand, within IAI46_03140at 672.892 kb on - strand, within IAI46_03140at 673.009 kb on + strand, within IAI46_03140

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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670,286 + IAI46_03130 0.15 -1.2
670,316 - IAI46_03130 0.18 -0.1
670,346 + IAI46_03130 0.21 +0.6
670,350 - IAI46_03130 0.22 -0.0
670,350 - IAI46_03130 0.22 -0.4
670,350 - IAI46_03130 0.22 -0.0
670,391 - IAI46_03130 0.26 -0.5
670,407 - IAI46_03130 0.28 +0.4
670,434 + IAI46_03130 0.30 +0.0
670,434 + IAI46_03130 0.30 +0.3
670,455 - IAI46_03130 0.33 -0.1
670,455 - IAI46_03130 0.33 +0.2
670,659 + IAI46_03130 0.54 -0.2
670,747 - IAI46_03130 0.63 +0.6
670,771 - IAI46_03130 0.65 +1.0
670,924 + IAI46_03130 0.81 -0.3
670,934 + IAI46_03130 0.82 +0.7
670,934 + IAI46_03130 0.82 -1.0
670,934 + IAI46_03130 0.82 -0.2
670,934 + IAI46_03130 0.82 +0.4
670,935 - IAI46_03130 0.82 +0.4
670,935 - IAI46_03130 0.82 +1.0
670,935 - IAI46_03130 0.82 +0.5
670,935 - IAI46_03130 0.82 -1.4
671,005 + IAI46_03130 0.90 +0.6
671,103 + -1.8
671,116 + +0.1
671,116 + +1.6
671,117 - -0.6
671,235 - +0.2
671,471 + IAI46_03135 0.32 -0.5
671,472 - IAI46_03135 0.32 +0.6
671,488 - IAI46_03135 0.34 -0.2
671,488 - IAI46_03135 0.34 -0.2
671,488 - IAI46_03135 0.34 -0.2
671,514 + IAI46_03135 0.37 -0.0
671,514 + IAI46_03135 0.37 +0.9
671,514 + IAI46_03135 0.37 -0.2
671,514 + IAI46_03135 0.37 -0.6
671,515 - IAI46_03135 0.37 +0.3
671,515 - IAI46_03135 0.37 -0.5
671,515 - IAI46_03135 0.37 +0.5
671,515 - IAI46_03135 0.37 -0.8
671,516 + IAI46_03135 0.37 +0.0
671,555 - IAI46_03135 0.42 -0.2
671,588 + IAI46_03135 0.45 +1.8
671,588 + IAI46_03135 0.45 -0.9
671,589 - IAI46_03135 0.45 -0.5
671,589 - IAI46_03135 0.45 +1.1
671,589 - IAI46_03135 0.45 +0.2
671,668 - IAI46_03135 0.55 +0.7
671,673 - IAI46_03135 0.55 -1.5
671,691 + IAI46_03135 0.57 +0.6
671,757 + IAI46_03135 0.65 +1.1
671,758 - IAI46_03135 0.65 -1.3
671,871 + IAI46_03135 0.78 -0.6
671,872 - IAI46_03135 0.78 +0.1
671,872 - IAI46_03135 0.78 -0.6
671,886 + IAI46_03135 0.80 -0.3
671,886 + IAI46_03135 0.80 -0.2
671,889 + IAI46_03135 0.80 -0.1
671,889 + IAI46_03135 0.80 -0.2
671,930 + IAI46_03135 0.85 +0.6
671,930 + IAI46_03135 0.85 -1.1
671,931 - IAI46_03135 0.85 -0.7
671,986 + -0.7
671,999 + -0.1
671,999 + +0.2
671,999 + +0.7
672,000 - +0.3
672,000 - -0.1
672,001 + +1.0
672,001 + +0.3
672,001 + -0.2
672,001 + +0.3
672,001 + -0.5
672,002 - +0.1
672,057 + -0.1
672,065 - +0.7
672,065 - -0.9
672,073 + -0.3
672,073 + +0.1
672,073 + +0.3
672,073 + -0.0
672,410 + IAI46_03140 0.26 +0.9
672,429 + IAI46_03140 0.28 +0.2
672,558 + IAI46_03140 0.38 +0.3
672,558 + IAI46_03140 0.38 +0.2
672,558 + IAI46_03140 0.38 +0.0
672,559 - IAI46_03140 0.38 -0.0
672,559 - IAI46_03140 0.38 +1.2
672,559 - IAI46_03140 0.38 -0.4
672,767 - IAI46_03140 0.55 -0.4
672,767 - IAI46_03140 0.55 +1.1
672,767 - IAI46_03140 0.55 -1.0
672,892 - IAI46_03140 0.64 +0.7
672,892 - IAI46_03140 0.64 -0.4
672,892 - IAI46_03140 0.64 -0.3
673,009 + IAI46_03140 0.74 +0.6

Or see this region's nucleotide sequence