Strain Fitness in Serratia liquefaciens MT49 around IAI46_02825

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02820 and IAI46_02825 are separated by 17 nucleotidesIAI46_02825 and IAI46_02830 are separated by 263 nucleotidesIAI46_02830 and IAI46_02835 are separated by 87 nucleotidesIAI46_02835 and IAI46_02840 are separated by 44 nucleotidesIAI46_02840 and IAI46_02845 are separated by 34 nucleotides IAI46_02820: IAI46_02820 - L-fucose:H+ symporter permease, at 605,878 to 607,107 _02820 IAI46_02825: IAI46_02825 - GGDEF domain-containing protein, at 607,125 to 608,198 _02825 IAI46_02830: IAI46_02830 - DUF1435 domain-containing protein, at 608,462 to 608,746 _02830 IAI46_02835: IAI46_02835 - tRNA-Leu, at 608,834 to 608,920 _02835 IAI46_02840: IAI46_02840 - tRNA-Leu, at 608,965 to 609,051 _02840 IAI46_02845: IAI46_02845 - tRNA-Leu, at 609,086 to 609,172 _02845 Position (kb) 607 608 609Strain fitness (log2 ratio) -2 -1 0 1 2at 606.133 kb on + strand, within IAI46_02820at 606.134 kb on - strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.167 kb on - strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.366 kb on + strand, within IAI46_02820at 606.367 kb on - strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.610 kb on + strand, within IAI46_02820at 606.610 kb on + strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.652 kb on + strand, within IAI46_02820at 606.652 kb on + strand, within IAI46_02820at 606.653 kb on - strand, within IAI46_02820at 606.653 kb on - strand, within IAI46_02820at 606.697 kb on + strand, within IAI46_02820at 606.708 kb on + strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.727 kb on - strand, within IAI46_02820at 606.793 kb on + strand, within IAI46_02820at 606.804 kb on + strand, within IAI46_02820at 606.804 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.883 kb on - strand, within IAI46_02820at 606.883 kb on - strand, within IAI46_02820at 606.961 kb on - strand, within IAI46_02820at 606.997 kb on + strandat 606.998 kb on - strandat 607.003 kb on - strandat 607.024 kb on + strandat 607.024 kb on + strandat 607.024 kb on + strandat 607.025 kb on - strandat 607.025 kb on - strandat 607.029 kb on + strandat 607.029 kb on + strandat 607.042 kb on + strandat 607.043 kb on - strandat 607.043 kb on - strandat 607.043 kb on - strandat 607.106 kb on - strandat 607.149 kb on - strandat 607.163 kb on + strandat 607.164 kb on - strandat 607.164 kb on - strandat 607.164 kb on - strandat 607.166 kb on + strandat 607.167 kb on - strandat 607.193 kb on - strandat 607.357 kb on + strand, within IAI46_02825at 607.357 kb on + strand, within IAI46_02825at 607.357 kb on + strand, within IAI46_02825at 607.358 kb on - strand, within IAI46_02825at 607.405 kb on + strand, within IAI46_02825at 607.484 kb on + strand, within IAI46_02825at 607.485 kb on - strand, within IAI46_02825at 607.485 kb on - strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.496 kb on + strand, within IAI46_02825at 607.502 kb on + strand, within IAI46_02825at 607.502 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.505 kb on - strand, within IAI46_02825at 607.505 kb on - strand, within IAI46_02825at 607.511 kb on + strand, within IAI46_02825at 607.571 kb on + strand, within IAI46_02825at 607.572 kb on - strand, within IAI46_02825at 607.603 kb on + strand, within IAI46_02825at 607.603 kb on + strand, within IAI46_02825at 607.660 kb on + strand, within IAI46_02825at 607.660 kb on + strand, within IAI46_02825at 607.721 kb on + strand, within IAI46_02825at 607.755 kb on + strand, within IAI46_02825at 607.756 kb on - strand, within IAI46_02825at 607.756 kb on - strand, within IAI46_02825at 607.779 kb on - strand, within IAI46_02825at 607.788 kb on + strand, within IAI46_02825at 607.788 kb on + strand, within IAI46_02825at 607.791 kb on + strand, within IAI46_02825at 607.791 kb on + strand, within IAI46_02825at 607.866 kb on - strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.886 kb on + strand, within IAI46_02825at 607.887 kb on - strand, within IAI46_02825at 607.890 kb on + strand, within IAI46_02825at 607.894 kb on - strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.940 kb on + strand, within IAI46_02825at 607.941 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.022 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.065 kb on - strand, within IAI46_02825at 608.069 kb on + strand, within IAI46_02825at 608.105 kb on + strandat 608.106 kb on - strandat 608.109 kb on + strandat 608.131 kb on - strandat 608.151 kb on + strandat 608.183 kb on - strandat 608.198 kb on + strandat 608.220 kb on - strandat 608.284 kb on + strandat 608.284 kb on + strandat 608.284 kb on + strandat 608.285 kb on - strandat 608.285 kb on - strandat 608.346 kb on - strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.562 kb on + strand, within IAI46_02830at 608.562 kb on + strand, within IAI46_02830at 608.593 kb on + strand, within IAI46_02830at 608.593 kb on + strand, within IAI46_02830at 608.672 kb on + strand, within IAI46_02830at 608.693 kb on - strand, within IAI46_02830at 608.745 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.870 kb on - strand, within IAI46_02835at 608.878 kb on + strand, within IAI46_02835at 608.953 kb on - strandat 608.953 kb on - strandat 608.953 kb on - strandat 609.001 kb on - strand, within IAI46_02840at 609.010 kb on - strand, within IAI46_02840at 609.010 kb on - strand, within IAI46_02840at 609.068 kb on - strandat 609.068 kb on - strandat 609.070 kb on - strandat 609.070 kb on - strandat 609.083 kb on - strandat 609.083 kb on - strandat 609.181 kb on + strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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606,133 + IAI46_02820 0.21 +0.3
606,134 - IAI46_02820 0.21 +0.3
606,166 + IAI46_02820 0.23 +0.4
606,166 + IAI46_02820 0.23 +0.7
606,166 + IAI46_02820 0.23 -0.0
606,166 + IAI46_02820 0.23 -0.1
606,167 - IAI46_02820 0.23 -0.7
606,286 + IAI46_02820 0.33 +0.3
606,286 + IAI46_02820 0.33 +0.2
606,366 + IAI46_02820 0.40 -0.4
606,367 - IAI46_02820 0.40 +1.2
606,451 + IAI46_02820 0.47 -0.6
606,451 + IAI46_02820 0.47 -0.4
606,451 + IAI46_02820 0.47 -0.6
606,451 + IAI46_02820 0.47 -0.4
606,451 + IAI46_02820 0.47 +1.2
606,451 + IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 -0.3
606,452 - IAI46_02820 0.47 +0.0
606,452 - IAI46_02820 0.47 -1.2
606,452 - IAI46_02820 0.47 -0.3
606,452 - IAI46_02820 0.47 +0.7
606,452 - IAI46_02820 0.47 -0.2
606,452 - IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 +0.8
606,452 - IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 -1.1
606,452 - IAI46_02820 0.47 +1.4
606,610 + IAI46_02820 0.60 -1.2
606,610 + IAI46_02820 0.60 +1.7
606,611 - IAI46_02820 0.60 +1.6
606,611 - IAI46_02820 0.60 +0.3
606,611 - IAI46_02820 0.60 +0.0
606,652 + IAI46_02820 0.63 +1.1
606,652 + IAI46_02820 0.63 +1.2
606,653 - IAI46_02820 0.63 -0.0
606,653 - IAI46_02820 0.63 -0.3
606,697 + IAI46_02820 0.67 +1.6
606,708 + IAI46_02820 0.67 +1.4
606,709 - IAI46_02820 0.68 +1.2
606,709 - IAI46_02820 0.68 -1.0
606,709 - IAI46_02820 0.68 +0.7
606,727 - IAI46_02820 0.69 -0.2
606,793 + IAI46_02820 0.74 +0.1
606,804 + IAI46_02820 0.75 -1.4
606,804 + IAI46_02820 0.75 -0.8
606,882 + IAI46_02820 0.82 +0.1
606,882 + IAI46_02820 0.82 -0.8
606,882 + IAI46_02820 0.82 -0.2
606,883 - IAI46_02820 0.82 +0.2
606,883 - IAI46_02820 0.82 -1.5
606,961 - IAI46_02820 0.88 +1.2
606,997 + +1.2
606,998 - -0.5
607,003 - +0.8
607,024 + +1.0
607,024 + -0.2
607,024 + +0.6
607,025 - -0.2
607,025 - +0.5
607,029 + +0.7
607,029 + +0.3
607,042 + +0.2
607,043 - +1.0
607,043 - +0.0
607,043 - -0.1
607,106 - -0.9
607,149 - -0.8
607,163 + -1.6
607,164 - -0.8
607,164 - -0.1
607,164 - -0.8
607,166 + -0.2
607,167 - -0.1
607,193 - +0.6
607,357 + IAI46_02825 0.22 +0.3
607,357 + IAI46_02825 0.22 -0.7
607,357 + IAI46_02825 0.22 -0.4
607,358 - IAI46_02825 0.22 +0.2
607,405 + IAI46_02825 0.26 +1.2
607,484 + IAI46_02825 0.33 -2.2
607,485 - IAI46_02825 0.34 +0.0
607,485 - IAI46_02825 0.34 +1.3
607,492 + IAI46_02825 0.34 +1.8
607,492 + IAI46_02825 0.34 -0.2
607,492 + IAI46_02825 0.34 -1.0
607,492 + IAI46_02825 0.34 +0.1
607,492 + IAI46_02825 0.34 -0.7
607,492 + IAI46_02825 0.34 -0.1
607,492 + IAI46_02825 0.34 -0.0
607,492 + IAI46_02825 0.34 -0.5
607,492 + IAI46_02825 0.34 -0.2
607,493 - IAI46_02825 0.34 +0.0
607,493 - IAI46_02825 0.34 -0.3
607,493 - IAI46_02825 0.34 +0.8
607,493 - IAI46_02825 0.34 +1.8
607,493 - IAI46_02825 0.34 -0.2
607,493 - IAI46_02825 0.34 +0.9
607,493 - IAI46_02825 0.34 +0.6
607,493 - IAI46_02825 0.34 -0.9
607,493 - IAI46_02825 0.34 +0.1
607,493 - IAI46_02825 0.34 +1.3
607,493 - IAI46_02825 0.34 -0.3
607,493 - IAI46_02825 0.34 +0.0
607,493 - IAI46_02825 0.34 +0.4
607,496 + IAI46_02825 0.35 +0.4
607,502 + IAI46_02825 0.35 +0.3
607,502 + IAI46_02825 0.35 +0.3
607,504 + IAI46_02825 0.35 -0.0
607,504 + IAI46_02825 0.35 +0.6
607,504 + IAI46_02825 0.35 +0.7
607,505 - IAI46_02825 0.35 -0.6
607,505 - IAI46_02825 0.35 +0.6
607,511 + IAI46_02825 0.36 -0.5
607,571 + IAI46_02825 0.42 -0.8
607,572 - IAI46_02825 0.42 +0.4
607,603 + IAI46_02825 0.45 +0.0
607,603 + IAI46_02825 0.45 -1.4
607,660 + IAI46_02825 0.50 -0.4
607,660 + IAI46_02825 0.50 +0.0
607,721 + IAI46_02825 0.55 -0.3
607,755 + IAI46_02825 0.59 -0.3
607,756 - IAI46_02825 0.59 +1.0
607,756 - IAI46_02825 0.59 +2.6
607,779 - IAI46_02825 0.61 -0.0
607,788 + IAI46_02825 0.62 +0.6
607,788 + IAI46_02825 0.62 -0.2
607,791 + IAI46_02825 0.62 -0.2
607,791 + IAI46_02825 0.62 -0.7
607,866 - IAI46_02825 0.69 -0.1
607,874 + IAI46_02825 0.70 -0.2
607,874 + IAI46_02825 0.70 -0.5
607,886 + IAI46_02825 0.71 +0.2
607,887 - IAI46_02825 0.71 +0.0
607,890 + IAI46_02825 0.71 -0.1
607,894 - IAI46_02825 0.72 -0.2
607,936 + IAI46_02825 0.76 +0.5
607,936 + IAI46_02825 0.76 -0.2
607,940 + IAI46_02825 0.76 +0.4
607,941 - IAI46_02825 0.76 +0.3
607,997 - IAI46_02825 0.81 +1.2
607,997 - IAI46_02825 0.81 -0.1
607,997 - IAI46_02825 0.81 -0.7
608,019 - IAI46_02825 0.83 -0.4
608,019 - IAI46_02825 0.83 +1.3
608,022 + IAI46_02825 0.84 +0.3
608,051 + IAI46_02825 0.86 -0.3
608,051 + IAI46_02825 0.86 -0.6
608,051 + IAI46_02825 0.86 -0.1
608,056 - IAI46_02825 0.87 -0.0
608,056 - IAI46_02825 0.87 -0.6
608,056 - IAI46_02825 0.87 -0.1
608,058 + IAI46_02825 0.87 +1.9
608,058 + IAI46_02825 0.87 -0.5
608,065 - IAI46_02825 0.88 +1.1
608,069 + IAI46_02825 0.88 -0.8
608,105 + -0.7
608,106 - +0.8
608,109 + +0.3
608,131 - +0.0
608,151 + -0.6
608,183 - +2.2
608,198 + -2.1
608,220 - -0.3
608,284 + +0.7
608,284 + +1.3
608,284 + -0.7
608,285 - -1.0
608,285 - +0.0
608,346 - +0.5
608,362 + -0.2
608,362 + +1.0
608,362 + -1.0
608,362 + -0.2
608,363 - +0.7
608,363 - -0.9
608,363 - +0.9
608,363 - +0.2
608,562 + IAI46_02830 0.35 -0.8
608,562 + IAI46_02830 0.35 -0.6
608,593 + IAI46_02830 0.46 +0.3
608,593 + IAI46_02830 0.46 +0.1
608,672 + IAI46_02830 0.74 +1.9
608,693 - IAI46_02830 0.81 -0.2
608,745 - -0.3
608,797 - +0.3
608,797 - -1.0
608,797 - +0.5
608,797 - +0.6
608,870 - IAI46_02835 0.41 +0.5
608,878 + IAI46_02835 0.51 -0.2
608,953 - -0.4
608,953 - +0.6
608,953 - -0.2
609,001 - IAI46_02840 0.41 +0.3
609,010 - IAI46_02840 0.52 +0.1
609,010 - IAI46_02840 0.52 -0.3
609,068 - +1.8
609,068 - -1.8
609,070 - -0.2
609,070 - -0.1
609,083 - +0.7
609,083 - +0.2
609,181 + +0.3
609,182 - -1.1
609,182 - +0.2
609,182 - +0.8
609,182 - +0.3
609,195 - +0.3

Or see this region's nucleotide sequence