Strain Fitness in Serratia liquefaciens MT49 around IAI46_02820

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02810 and IAI46_02815 overlap by 4 nucleotidesIAI46_02815 and IAI46_02820 are separated by 27 nucleotidesIAI46_02820 and IAI46_02825 are separated by 17 nucleotides IAI46_02810: IAI46_02810 - SDR family oxidoreductase, at 604,718 to 605,494 _02810 IAI46_02815: IAI46_02815 - L-rhamnose mutarotase, at 605,491 to 605,850 _02815 IAI46_02820: IAI46_02820 - L-fucose:H+ symporter permease, at 605,878 to 607,107 _02820 IAI46_02825: IAI46_02825 - GGDEF domain-containing protein, at 607,125 to 608,198 _02825 Position (kb) 605 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 604.909 kb on - strand, within IAI46_02810at 604.984 kb on + strand, within IAI46_02810at 605.066 kb on + strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.069 kb on + strand, within IAI46_02810at 605.289 kb on - strand, within IAI46_02810at 605.306 kb on - strand, within IAI46_02810at 605.466 kb on - strandat 605.589 kb on + strand, within IAI46_02815at 605.648 kb on - strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.686 kb on - strand, within IAI46_02815at 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.949 kb on + strandat 605.950 kb on - strandat 605.973 kb on + strandat 605.974 kb on - strandat 605.989 kb on + strandat 605.989 kb on + strandat 606.005 kb on + strand, within IAI46_02820at 606.005 kb on + strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.040 kb on - strand, within IAI46_02820at 606.059 kb on + strand, within IAI46_02820at 606.059 kb on + strand, within IAI46_02820at 606.060 kb on - strand, within IAI46_02820at 606.060 kb on - strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.074 kb on - strand, within IAI46_02820at 606.085 kb on + strand, within IAI46_02820at 606.112 kb on + strand, within IAI46_02820at 606.117 kb on + strand, within IAI46_02820at 606.118 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.133 kb on + strand, within IAI46_02820at 606.134 kb on - strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.167 kb on - strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.366 kb on + strand, within IAI46_02820at 606.367 kb on - strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.610 kb on + strand, within IAI46_02820at 606.610 kb on + strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.611 kb on - strand, within IAI46_02820at 606.652 kb on + strand, within IAI46_02820at 606.652 kb on + strand, within IAI46_02820at 606.653 kb on - strand, within IAI46_02820at 606.653 kb on - strand, within IAI46_02820at 606.697 kb on + strand, within IAI46_02820at 606.708 kb on + strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.709 kb on - strand, within IAI46_02820at 606.727 kb on - strand, within IAI46_02820at 606.793 kb on + strand, within IAI46_02820at 606.804 kb on + strand, within IAI46_02820at 606.804 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.882 kb on + strand, within IAI46_02820at 606.883 kb on - strand, within IAI46_02820at 606.883 kb on - strand, within IAI46_02820at 606.961 kb on - strand, within IAI46_02820at 606.997 kb on + strandat 606.998 kb on - strandat 607.003 kb on - strandat 607.024 kb on + strandat 607.024 kb on + strandat 607.024 kb on + strandat 607.025 kb on - strandat 607.025 kb on - strandat 607.029 kb on + strandat 607.029 kb on + strandat 607.042 kb on + strandat 607.043 kb on - strandat 607.043 kb on - strandat 607.043 kb on - strandat 607.106 kb on - strandat 607.149 kb on - strandat 607.163 kb on + strandat 607.164 kb on - strandat 607.164 kb on - strandat 607.164 kb on - strandat 607.166 kb on + strandat 607.167 kb on - strandat 607.193 kb on - strandat 607.357 kb on + strand, within IAI46_02825at 607.357 kb on + strand, within IAI46_02825at 607.357 kb on + strand, within IAI46_02825at 607.358 kb on - strand, within IAI46_02825at 607.405 kb on + strand, within IAI46_02825at 607.484 kb on + strand, within IAI46_02825at 607.485 kb on - strand, within IAI46_02825at 607.485 kb on - strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.492 kb on + strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.493 kb on - strand, within IAI46_02825at 607.496 kb on + strand, within IAI46_02825at 607.502 kb on + strand, within IAI46_02825at 607.502 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.504 kb on + strand, within IAI46_02825at 607.505 kb on - strand, within IAI46_02825at 607.505 kb on - strand, within IAI46_02825at 607.511 kb on + strand, within IAI46_02825at 607.571 kb on + strand, within IAI46_02825at 607.572 kb on - strand, within IAI46_02825at 607.603 kb on + strand, within IAI46_02825at 607.603 kb on + strand, within IAI46_02825at 607.660 kb on + strand, within IAI46_02825at 607.660 kb on + strand, within IAI46_02825at 607.721 kb on + strand, within IAI46_02825at 607.755 kb on + strand, within IAI46_02825at 607.756 kb on - strand, within IAI46_02825at 607.756 kb on - strand, within IAI46_02825at 607.779 kb on - strand, within IAI46_02825at 607.788 kb on + strand, within IAI46_02825at 607.788 kb on + strand, within IAI46_02825at 607.791 kb on + strand, within IAI46_02825at 607.791 kb on + strand, within IAI46_02825at 607.866 kb on - strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.886 kb on + strand, within IAI46_02825at 607.887 kb on - strand, within IAI46_02825at 607.890 kb on + strand, within IAI46_02825at 607.894 kb on - strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.940 kb on + strand, within IAI46_02825at 607.941 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.022 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.065 kb on - strand, within IAI46_02825at 608.069 kb on + strand, within IAI46_02825at 608.105 kb on + strandat 608.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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604,909 - IAI46_02810 0.25 +0.0
604,984 + IAI46_02810 0.34 -0.0
605,066 + IAI46_02810 0.45 +0.7
605,067 - IAI46_02810 0.45 -1.2
605,067 - IAI46_02810 0.45 -0.6
605,067 - IAI46_02810 0.45 -1.0
605,069 + IAI46_02810 0.45 +0.2
605,289 - IAI46_02810 0.73 +0.0
605,306 - IAI46_02810 0.76 -1.0
605,466 - +1.0
605,589 + IAI46_02815 0.27 +0.6
605,648 - IAI46_02815 0.44 +0.2
605,685 + IAI46_02815 0.54 -0.1
605,685 + IAI46_02815 0.54 -0.6
605,685 + IAI46_02815 0.54 +0.3
605,686 - IAI46_02815 0.54 -0.1
605,873 + -1.2
605,873 + -0.3
605,873 + +0.0
605,873 + -0.8
605,873 + -0.2
605,873 + +0.5
605,873 + +0.1
605,873 + -0.8
605,873 + +0.2
605,873 + +0.7
605,873 + +0.3
605,873 + -1.0
605,873 + +1.2
605,873 + -1.2
605,873 + +0.6
605,874 - +0.0
605,874 - +0.2
605,874 - -0.4
605,874 - +1.2
605,874 - +0.4
605,949 + +0.3
605,950 - -0.4
605,973 + +0.7
605,974 - -0.1
605,989 + +0.0
605,989 + +0.7
606,005 + IAI46_02820 0.10 +1.0
606,005 + IAI46_02820 0.10 -0.8
606,006 - IAI46_02820 0.10 -0.1
606,006 - IAI46_02820 0.10 -0.3
606,006 - IAI46_02820 0.10 +0.1
606,008 + IAI46_02820 0.11 +0.8
606,008 + IAI46_02820 0.11 -0.6
606,008 + IAI46_02820 0.11 -0.0
606,040 - IAI46_02820 0.13 -0.6
606,059 + IAI46_02820 0.15 -0.1
606,059 + IAI46_02820 0.15 +0.0
606,060 - IAI46_02820 0.15 +0.1
606,060 - IAI46_02820 0.15 +0.6
606,073 + IAI46_02820 0.16 +0.4
606,073 + IAI46_02820 0.16 +0.3
606,073 + IAI46_02820 0.16 -0.5
606,074 - IAI46_02820 0.16 -1.9
606,085 + IAI46_02820 0.17 -0.6
606,112 + IAI46_02820 0.19 +0.7
606,117 + IAI46_02820 0.19 +0.3
606,118 - IAI46_02820 0.20 -0.2
606,124 - IAI46_02820 0.20 +0.2
606,124 - IAI46_02820 0.20 -0.1
606,124 - IAI46_02820 0.20 -0.7
606,133 + IAI46_02820 0.21 +0.3
606,134 - IAI46_02820 0.21 +0.3
606,166 + IAI46_02820 0.23 +0.4
606,166 + IAI46_02820 0.23 +0.7
606,166 + IAI46_02820 0.23 -0.0
606,166 + IAI46_02820 0.23 -0.1
606,167 - IAI46_02820 0.23 -0.7
606,286 + IAI46_02820 0.33 +0.3
606,286 + IAI46_02820 0.33 +0.2
606,366 + IAI46_02820 0.40 -0.4
606,367 - IAI46_02820 0.40 +1.2
606,451 + IAI46_02820 0.47 -0.6
606,451 + IAI46_02820 0.47 -0.4
606,451 + IAI46_02820 0.47 -0.6
606,451 + IAI46_02820 0.47 -0.4
606,451 + IAI46_02820 0.47 +1.2
606,451 + IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 -0.3
606,452 - IAI46_02820 0.47 +0.0
606,452 - IAI46_02820 0.47 -1.2
606,452 - IAI46_02820 0.47 -0.3
606,452 - IAI46_02820 0.47 +0.7
606,452 - IAI46_02820 0.47 -0.2
606,452 - IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 +0.8
606,452 - IAI46_02820 0.47 +0.3
606,452 - IAI46_02820 0.47 -1.1
606,452 - IAI46_02820 0.47 +1.4
606,610 + IAI46_02820 0.60 -1.2
606,610 + IAI46_02820 0.60 +1.7
606,611 - IAI46_02820 0.60 +1.6
606,611 - IAI46_02820 0.60 +0.3
606,611 - IAI46_02820 0.60 +0.0
606,652 + IAI46_02820 0.63 +1.1
606,652 + IAI46_02820 0.63 +1.2
606,653 - IAI46_02820 0.63 -0.0
606,653 - IAI46_02820 0.63 -0.3
606,697 + IAI46_02820 0.67 +1.6
606,708 + IAI46_02820 0.67 +1.4
606,709 - IAI46_02820 0.68 +1.2
606,709 - IAI46_02820 0.68 -1.0
606,709 - IAI46_02820 0.68 +0.7
606,727 - IAI46_02820 0.69 -0.2
606,793 + IAI46_02820 0.74 +0.1
606,804 + IAI46_02820 0.75 -1.4
606,804 + IAI46_02820 0.75 -0.8
606,882 + IAI46_02820 0.82 +0.1
606,882 + IAI46_02820 0.82 -0.8
606,882 + IAI46_02820 0.82 -0.2
606,883 - IAI46_02820 0.82 +0.2
606,883 - IAI46_02820 0.82 -1.5
606,961 - IAI46_02820 0.88 +1.2
606,997 + +1.2
606,998 - -0.5
607,003 - +0.8
607,024 + +1.0
607,024 + -0.2
607,024 + +0.6
607,025 - -0.2
607,025 - +0.5
607,029 + +0.7
607,029 + +0.3
607,042 + +0.2
607,043 - +1.0
607,043 - +0.0
607,043 - -0.1
607,106 - -0.9
607,149 - -0.8
607,163 + -1.6
607,164 - -0.8
607,164 - -0.1
607,164 - -0.8
607,166 + -0.2
607,167 - -0.1
607,193 - +0.6
607,357 + IAI46_02825 0.22 +0.3
607,357 + IAI46_02825 0.22 -0.7
607,357 + IAI46_02825 0.22 -0.4
607,358 - IAI46_02825 0.22 +0.2
607,405 + IAI46_02825 0.26 +1.2
607,484 + IAI46_02825 0.33 -2.2
607,485 - IAI46_02825 0.34 +0.0
607,485 - IAI46_02825 0.34 +1.3
607,492 + IAI46_02825 0.34 +1.8
607,492 + IAI46_02825 0.34 -0.2
607,492 + IAI46_02825 0.34 -1.0
607,492 + IAI46_02825 0.34 +0.1
607,492 + IAI46_02825 0.34 -0.7
607,492 + IAI46_02825 0.34 -0.1
607,492 + IAI46_02825 0.34 -0.0
607,492 + IAI46_02825 0.34 -0.5
607,492 + IAI46_02825 0.34 -0.2
607,493 - IAI46_02825 0.34 +0.0
607,493 - IAI46_02825 0.34 -0.3
607,493 - IAI46_02825 0.34 +0.8
607,493 - IAI46_02825 0.34 +1.8
607,493 - IAI46_02825 0.34 -0.2
607,493 - IAI46_02825 0.34 +0.9
607,493 - IAI46_02825 0.34 +0.6
607,493 - IAI46_02825 0.34 -0.9
607,493 - IAI46_02825 0.34 +0.1
607,493 - IAI46_02825 0.34 +1.3
607,493 - IAI46_02825 0.34 -0.3
607,493 - IAI46_02825 0.34 +0.0
607,493 - IAI46_02825 0.34 +0.4
607,496 + IAI46_02825 0.35 +0.4
607,502 + IAI46_02825 0.35 +0.3
607,502 + IAI46_02825 0.35 +0.3
607,504 + IAI46_02825 0.35 -0.0
607,504 + IAI46_02825 0.35 +0.6
607,504 + IAI46_02825 0.35 +0.7
607,505 - IAI46_02825 0.35 -0.6
607,505 - IAI46_02825 0.35 +0.6
607,511 + IAI46_02825 0.36 -0.5
607,571 + IAI46_02825 0.42 -0.8
607,572 - IAI46_02825 0.42 +0.4
607,603 + IAI46_02825 0.45 +0.0
607,603 + IAI46_02825 0.45 -1.4
607,660 + IAI46_02825 0.50 -0.4
607,660 + IAI46_02825 0.50 +0.0
607,721 + IAI46_02825 0.55 -0.3
607,755 + IAI46_02825 0.59 -0.3
607,756 - IAI46_02825 0.59 +1.0
607,756 - IAI46_02825 0.59 +2.6
607,779 - IAI46_02825 0.61 -0.0
607,788 + IAI46_02825 0.62 +0.6
607,788 + IAI46_02825 0.62 -0.2
607,791 + IAI46_02825 0.62 -0.2
607,791 + IAI46_02825 0.62 -0.7
607,866 - IAI46_02825 0.69 -0.1
607,874 + IAI46_02825 0.70 -0.2
607,874 + IAI46_02825 0.70 -0.5
607,886 + IAI46_02825 0.71 +0.2
607,887 - IAI46_02825 0.71 +0.0
607,890 + IAI46_02825 0.71 -0.1
607,894 - IAI46_02825 0.72 -0.2
607,936 + IAI46_02825 0.76 +0.5
607,936 + IAI46_02825 0.76 -0.2
607,940 + IAI46_02825 0.76 +0.4
607,941 - IAI46_02825 0.76 +0.3
607,997 - IAI46_02825 0.81 +1.2
607,997 - IAI46_02825 0.81 -0.1
607,997 - IAI46_02825 0.81 -0.7
608,019 - IAI46_02825 0.83 -0.4
608,019 - IAI46_02825 0.83 +1.3
608,022 + IAI46_02825 0.84 +0.3
608,051 + IAI46_02825 0.86 -0.3
608,051 + IAI46_02825 0.86 -0.6
608,051 + IAI46_02825 0.86 -0.1
608,056 - IAI46_02825 0.87 -0.0
608,056 - IAI46_02825 0.87 -0.6
608,056 - IAI46_02825 0.87 -0.1
608,058 + IAI46_02825 0.87 +1.9
608,058 + IAI46_02825 0.87 -0.5
608,065 - IAI46_02825 0.88 +1.1
608,069 + IAI46_02825 0.88 -0.8
608,105 + -0.7
608,106 - +0.8

Or see this region's nucleotide sequence