Strain Fitness in Serratia liquefaciens MT49 around IAI46_01870

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01865 and IAI46_01870 overlap by 4 nucleotidesIAI46_01870 and IAI46_01875 are separated by 8 nucleotides IAI46_01865: IAI46_01865 - two-component system sensor histidine kinase PmrB, at 401,384 to 402,448 _01865 IAI46_01870: IAI46_01870 - two-component system response regulator PmrA, at 402,445 to 403,107 _01870 IAI46_01875: IAI46_01875 - serine-type D-Ala-D-Ala carboxypeptidase, at 403,116 to 404,549 _01875 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1at 401.483 kb on + strandat 401.484 kb on - strandat 401.484 kb on - strandat 401.523 kb on + strand, within IAI46_01865at 401.804 kb on + strand, within IAI46_01865at 401.804 kb on + strand, within IAI46_01865at 401.805 kb on - strand, within IAI46_01865at 401.844 kb on + strand, within IAI46_01865at 401.902 kb on + strand, within IAI46_01865at 401.903 kb on - strand, within IAI46_01865at 401.903 kb on - strand, within IAI46_01865at 401.985 kb on - strand, within IAI46_01865at 402.002 kb on - strand, within IAI46_01865at 402.002 kb on - strand, within IAI46_01865at 402.002 kb on - strand, within IAI46_01865at 402.005 kb on + strand, within IAI46_01865at 402.005 kb on + strand, within IAI46_01865at 402.005 kb on + strand, within IAI46_01865at 402.005 kb on + strand, within IAI46_01865at 402.006 kb on - strand, within IAI46_01865at 402.006 kb on - strand, within IAI46_01865at 402.193 kb on + strand, within IAI46_01865at 402.194 kb on - strand, within IAI46_01865at 402.468 kb on - strandat 402.523 kb on - strand, within IAI46_01870at 402.523 kb on - strand, within IAI46_01870at 402.528 kb on + strand, within IAI46_01870at 402.554 kb on - strand, within IAI46_01870at 402.554 kb on - strand, within IAI46_01870at 402.570 kb on + strand, within IAI46_01870at 402.572 kb on + strand, within IAI46_01870at 402.572 kb on + strand, within IAI46_01870at 402.573 kb on - strand, within IAI46_01870at 402.683 kb on + strand, within IAI46_01870at 402.683 kb on + strand, within IAI46_01870at 402.683 kb on + strand, within IAI46_01870at 402.683 kb on + strand, within IAI46_01870at 402.684 kb on - strand, within IAI46_01870at 402.729 kb on + strand, within IAI46_01870at 402.729 kb on + strand, within IAI46_01870at 402.730 kb on - strand, within IAI46_01870at 402.753 kb on - strand, within IAI46_01870at 402.785 kb on - strand, within IAI46_01870at 402.785 kb on - strand, within IAI46_01870at 402.793 kb on + strand, within IAI46_01870at 402.815 kb on + strand, within IAI46_01870at 402.963 kb on + strand, within IAI46_01870at 402.974 kb on + strand, within IAI46_01870at 402.975 kb on - strand, within IAI46_01870at 402.975 kb on - strand, within IAI46_01870at 402.975 kb on - strand, within IAI46_01870at 403.034 kb on + strand, within IAI46_01870at 403.034 kb on + strand, within IAI46_01870at 403.034 kb on + strand, within IAI46_01870at 403.035 kb on - strand, within IAI46_01870at 403.111 kb on - strandat 403.111 kb on - strandat 403.208 kb on - strandat 403.208 kb on - strandat 403.215 kb on + strandat 403.215 kb on + strandat 403.215 kb on + strandat 403.216 kb on - strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.219 kb on + strandat 403.220 kb on - strandat 403.220 kb on - strandat 403.220 kb on - strandat 403.224 kb on + strandat 403.224 kb on + strandat 403.224 kb on + strandat 403.225 kb on - strandat 403.225 kb on - strandat 403.225 kb on - strandat 403.225 kb on - strandat 403.225 kb on - strandat 403.225 kb on - strandat 403.256 kb on + strandat 403.256 kb on + strandat 403.257 kb on - strandat 403.257 kb on - strandat 403.260 kb on - strand, within IAI46_01875at 403.274 kb on + strand, within IAI46_01875at 403.275 kb on - strand, within IAI46_01875at 403.275 kb on - strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.276 kb on + strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.277 kb on - strand, within IAI46_01875at 403.278 kb on + strand, within IAI46_01875at 403.278 kb on + strand, within IAI46_01875at 403.278 kb on + strand, within IAI46_01875at 403.278 kb on + strand, within IAI46_01875at 403.279 kb on - strand, within IAI46_01875at 403.279 kb on - strand, within IAI46_01875at 403.279 kb on - strand, within IAI46_01875at 403.279 kb on - strand, within IAI46_01875at 403.279 kb on - strand, within IAI46_01875at 403.423 kb on + strand, within IAI46_01875at 403.423 kb on + strand, within IAI46_01875at 403.423 kb on + strand, within IAI46_01875at 403.463 kb on + strand, within IAI46_01875at 403.489 kb on - strand, within IAI46_01875at 403.569 kb on - strand, within IAI46_01875at 403.647 kb on - strand, within IAI46_01875at 403.789 kb on + strand, within IAI46_01875at 403.790 kb on - strand, within IAI46_01875at 403.790 kb on - strand, within IAI46_01875at 403.790 kb on - strand, within IAI46_01875at 403.863 kb on - strand, within IAI46_01875at 403.904 kb on - strand, within IAI46_01875at 403.946 kb on + strand, within IAI46_01875at 403.947 kb on - strand, within IAI46_01875at 403.947 kb on - strand, within IAI46_01875at 403.952 kb on + strand, within IAI46_01875at 403.953 kb on - strand, within IAI46_01875at 403.953 kb on - strand, within IAI46_01875at 403.953 kb on - strand, within IAI46_01875at 403.953 kb on - strand, within IAI46_01875at 403.953 kb on - strand, within IAI46_01875at 403.967 kb on - strand, within IAI46_01875at 403.967 kb on - strand, within IAI46_01875at 403.967 kb on - strand, within IAI46_01875at 403.982 kb on + strand, within IAI46_01875

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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401,483 + -0.8
401,484 - +0.3
401,484 - +0.7
401,523 + IAI46_01865 0.13 -0.3
401,804 + IAI46_01865 0.39 +0.0
401,804 + IAI46_01865 0.39 +0.3
401,805 - IAI46_01865 0.40 -0.5
401,844 + IAI46_01865 0.43 +0.4
401,902 + IAI46_01865 0.49 -1.2
401,903 - IAI46_01865 0.49 +0.1
401,903 - IAI46_01865 0.49 +0.7
401,985 - IAI46_01865 0.56 -0.1
402,002 - IAI46_01865 0.58 -1.2
402,002 - IAI46_01865 0.58 +0.2
402,002 - IAI46_01865 0.58 -1.2
402,005 + IAI46_01865 0.58 -0.5
402,005 + IAI46_01865 0.58 -0.2
402,005 + IAI46_01865 0.58 -0.5
402,005 + IAI46_01865 0.58 -0.1
402,006 - IAI46_01865 0.58 -0.3
402,006 - IAI46_01865 0.58 +0.2
402,193 + IAI46_01865 0.76 +0.7
402,194 - IAI46_01865 0.76 +0.3
402,468 - -0.1
402,523 - IAI46_01870 0.12 +0.1
402,523 - IAI46_01870 0.12 -0.3
402,528 + IAI46_01870 0.13 +0.4
402,554 - IAI46_01870 0.16 +0.4
402,554 - IAI46_01870 0.16 -0.7
402,570 + IAI46_01870 0.19 -0.3
402,572 + IAI46_01870 0.19 +1.4
402,572 + IAI46_01870 0.19 -1.8
402,573 - IAI46_01870 0.19 +0.3
402,683 + IAI46_01870 0.36 +1.1
402,683 + IAI46_01870 0.36 +0.1
402,683 + IAI46_01870 0.36 -0.3
402,683 + IAI46_01870 0.36 +0.2
402,684 - IAI46_01870 0.36 -0.1
402,729 + IAI46_01870 0.43 -0.2
402,729 + IAI46_01870 0.43 +0.1
402,730 - IAI46_01870 0.43 -1.5
402,753 - IAI46_01870 0.46 -2.1
402,785 - IAI46_01870 0.51 +1.3
402,785 - IAI46_01870 0.51 -0.5
402,793 + IAI46_01870 0.52 -0.0
402,815 + IAI46_01870 0.56 -0.8
402,963 + IAI46_01870 0.78 -0.3
402,974 + IAI46_01870 0.80 +0.8
402,975 - IAI46_01870 0.80 -1.1
402,975 - IAI46_01870 0.80 +0.1
402,975 - IAI46_01870 0.80 -0.1
403,034 + IAI46_01870 0.89 +0.8
403,034 + IAI46_01870 0.89 -0.4
403,034 + IAI46_01870 0.89 -0.1
403,035 - IAI46_01870 0.89 -0.6
403,111 - +0.7
403,111 - -2.1
403,208 - +0.7
403,208 - -0.2
403,215 + -0.3
403,215 + -0.6
403,215 + -0.2
403,216 - -0.5
403,219 + -0.1
403,219 + -0.1
403,219 + -1.7
403,219 + -0.5
403,219 + -0.1
403,219 + +0.6
403,219 + -0.0
403,219 + +1.3
403,219 + +0.4
403,219 + -0.3
403,219 + +0.6
403,219 + +1.0
403,220 - -0.3
403,220 - +0.0
403,220 - +0.1
403,224 + -0.5
403,224 + +0.2
403,224 + +0.9
403,225 - +0.1
403,225 - +0.7
403,225 - +0.7
403,225 - -0.7
403,225 - +0.5
403,225 - +0.1
403,256 + +0.4
403,256 + -0.5
403,257 - +0.0
403,257 - -0.1
403,260 - IAI46_01875 0.10 +0.0
403,274 + IAI46_01875 0.11 -0.0
403,275 - IAI46_01875 0.11 +0.0
403,275 - IAI46_01875 0.11 -0.1
403,276 + IAI46_01875 0.11 -0.0
403,276 + IAI46_01875 0.11 -0.1
403,276 + IAI46_01875 0.11 +1.1
403,276 + IAI46_01875 0.11 +1.6
403,276 + IAI46_01875 0.11 -0.1
403,276 + IAI46_01875 0.11 -0.0
403,276 + IAI46_01875 0.11 -1.4
403,276 + IAI46_01875 0.11 -0.8
403,277 - IAI46_01875 0.11 +1.2
403,277 - IAI46_01875 0.11 -0.7
403,277 - IAI46_01875 0.11 -0.9
403,277 - IAI46_01875 0.11 -0.1
403,277 - IAI46_01875 0.11 -0.4
403,277 - IAI46_01875 0.11 +0.4
403,277 - IAI46_01875 0.11 -0.1
403,277 - IAI46_01875 0.11 +0.7
403,277 - IAI46_01875 0.11 -0.1
403,277 - IAI46_01875 0.11 -1.5
403,278 + IAI46_01875 0.11 +1.3
403,278 + IAI46_01875 0.11 +0.4
403,278 + IAI46_01875 0.11 -0.9
403,278 + IAI46_01875 0.11 +0.1
403,279 - IAI46_01875 0.11 +0.8
403,279 - IAI46_01875 0.11 +0.6
403,279 - IAI46_01875 0.11 +0.6
403,279 - IAI46_01875 0.11 +0.8
403,279 - IAI46_01875 0.11 -1.0
403,423 + IAI46_01875 0.21 +0.3
403,423 + IAI46_01875 0.21 -0.4
403,423 + IAI46_01875 0.21 +1.5
403,463 + IAI46_01875 0.24 +0.4
403,489 - IAI46_01875 0.26 +0.2
403,569 - IAI46_01875 0.32 +0.6
403,647 - IAI46_01875 0.37 +0.3
403,789 + IAI46_01875 0.47 -0.6
403,790 - IAI46_01875 0.47 +0.7
403,790 - IAI46_01875 0.47 +0.2
403,790 - IAI46_01875 0.47 -0.9
403,863 - IAI46_01875 0.52 -0.2
403,904 - IAI46_01875 0.55 -0.8
403,946 + IAI46_01875 0.58 +0.6
403,947 - IAI46_01875 0.58 +0.7
403,947 - IAI46_01875 0.58 +1.1
403,952 + IAI46_01875 0.58 +0.6
403,953 - IAI46_01875 0.58 -1.5
403,953 - IAI46_01875 0.58 -0.0
403,953 - IAI46_01875 0.58 -0.3
403,953 - IAI46_01875 0.58 +0.7
403,953 - IAI46_01875 0.58 +0.2
403,967 - IAI46_01875 0.59 +0.1
403,967 - IAI46_01875 0.59 +0.7
403,967 - IAI46_01875 0.59 -0.4
403,982 + IAI46_01875 0.60 +0.6

Or see this region's nucleotide sequence