Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01435 and IAI46_01440 are separated by 12 nucleotides IAI46_01440 and IAI46_01445 are separated by 695 nucleotides
IAI46_01435: IAI46_01435 - trimethylamine-N-oxide reductase TorA, at 315,421 to 317,955
_01435
IAI46_01440: IAI46_01440 - pentaheme c-type cytochrome TorC, at 317,968 to 319,131
_01440
IAI46_01445: IAI46_01445 - TMAO reductase system periplasmic protein TorT, at 319,827 to 320,990
_01445
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.988 kb on + strand, within IAI46_01435 at 317.018 kb on + strand, within IAI46_01435 at 317.058 kb on - strand, within IAI46_01435 at 317.078 kb on - strand, within IAI46_01435 at 317.078 kb on - strand, within IAI46_01435 at 317.083 kb on + strand, within IAI46_01435 at 317.151 kb on + strand, within IAI46_01435 at 317.151 kb on + strand, within IAI46_01435 at 317.151 kb on + strand, within IAI46_01435 at 317.151 kb on + strand, within IAI46_01435 at 317.151 kb on + strand, within IAI46_01435 at 317.152 kb on - strand, within IAI46_01435 at 317.152 kb on - strand, within IAI46_01435 at 317.211 kb on + strand, within IAI46_01435 at 317.222 kb on + strand, within IAI46_01435 at 317.222 kb on + strand, within IAI46_01435 at 317.231 kb on + strand, within IAI46_01435 at 317.232 kb on - strand, within IAI46_01435 at 317.348 kb on + strand, within IAI46_01435 at 317.348 kb on + strand, within IAI46_01435 at 317.348 kb on + strand, within IAI46_01435 at 317.348 kb on + strand, within IAI46_01435 at 317.349 kb on - strand, within IAI46_01435 at 317.349 kb on - strand, within IAI46_01435 at 317.349 kb on - strand, within IAI46_01435 at 317.405 kb on + strand, within IAI46_01435 at 317.406 kb on - strand, within IAI46_01435 at 317.528 kb on + strand, within IAI46_01435 at 317.529 kb on - strand, within IAI46_01435 at 317.558 kb on + strand, within IAI46_01435 at 317.559 kb on - strand, within IAI46_01435 at 317.587 kb on + strand, within IAI46_01435 at 317.588 kb on - strand, within IAI46_01435 at 317.622 kb on + strand, within IAI46_01435 at 317.640 kb on + strand, within IAI46_01435 at 317.640 kb on + strand, within IAI46_01435 at 317.641 kb on - strand, within IAI46_01435 at 317.729 kb on + strand at 317.730 kb on - strand at 317.730 kb on - strand at 317.730 kb on - strand at 317.733 kb on + strand at 317.734 kb on - strand at 317.816 kb on - strand at 317.816 kb on - strand at 317.858 kb on - strand at 317.860 kb on + strand at 317.860 kb on + strand at 317.860 kb on + strand at 317.860 kb on + strand at 317.861 kb on - strand at 317.861 kb on - strand at 317.861 kb on - strand at 317.861 kb on - strand at 317.875 kb on + strand at 317.875 kb on + strand at 317.970 kb on - strand at 318.152 kb on + strand, within IAI46_01440 at 318.168 kb on - strand, within IAI46_01440 at 318.168 kb on - strand, within IAI46_01440 at 318.418 kb on + strand, within IAI46_01440 at 318.418 kb on + strand, within IAI46_01440 at 318.482 kb on + strand, within IAI46_01440 at 318.482 kb on + strand, within IAI46_01440 at 318.486 kb on + strand, within IAI46_01440 at 318.486 kb on + strand, within IAI46_01440 at 318.487 kb on - strand, within IAI46_01440 at 318.487 kb on - strand, within IAI46_01440 at 318.504 kb on + strand, within IAI46_01440 at 318.504 kb on + strand, within IAI46_01440 at 318.504 kb on + strand, within IAI46_01440 at 318.504 kb on + strand, within IAI46_01440 at 318.505 kb on - strand, within IAI46_01440 at 318.505 kb on - strand, within IAI46_01440 at 318.505 kb on - strand, within IAI46_01440 at 318.505 kb on - strand, within IAI46_01440 at 318.505 kb on - strand, within IAI46_01440 at 318.506 kb on + strand, within IAI46_01440 at 318.506 kb on + strand, within IAI46_01440 at 318.506 kb on + strand, within IAI46_01440 at 318.506 kb on + strand, within IAI46_01440 at 318.507 kb on - strand, within IAI46_01440 at 318.507 kb on - strand, within IAI46_01440 at 318.507 kb on - strand, within IAI46_01440 at 318.507 kb on - strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.508 kb on + strand, within IAI46_01440 at 318.509 kb on - strand, within IAI46_01440 at 318.509 kb on - strand, within IAI46_01440 at 318.509 kb on - strand, within IAI46_01440 at 318.509 kb on - strand, within IAI46_01440 at 318.549 kb on + strand, within IAI46_01440 at 318.549 kb on + strand, within IAI46_01440 at 318.550 kb on - strand, within IAI46_01440 at 318.550 kb on - strand, within IAI46_01440 at 318.550 kb on - strand, within IAI46_01440 at 318.576 kb on + strand, within IAI46_01440 at 318.701 kb on + strand, within IAI46_01440 at 318.701 kb on + strand, within IAI46_01440 at 318.702 kb on - strand, within IAI46_01440 at 318.702 kb on - strand, within IAI46_01440 at 318.702 kb on - strand, within IAI46_01440 at 318.702 kb on - strand, within IAI46_01440 at 318.702 kb on - strand, within IAI46_01440 at 318.706 kb on - strand, within IAI46_01440 at 318.801 kb on + strand, within IAI46_01440 at 318.801 kb on + strand, within IAI46_01440 at 318.802 kb on - strand, within IAI46_01440 at 318.819 kb on + strand, within IAI46_01440 at 318.830 kb on + strand, within IAI46_01440 at 318.830 kb on + strand, within IAI46_01440 at 318.831 kb on - strand, within IAI46_01440 at 318.876 kb on + strand, within IAI46_01440 at 318.877 kb on - strand, within IAI46_01440 at 318.877 kb on - strand, within IAI46_01440 at 318.888 kb on + strand, within IAI46_01440 at 318.889 kb on - strand, within IAI46_01440 at 318.913 kb on + strand, within IAI46_01440 at 318.914 kb on - strand, within IAI46_01440 at 318.950 kb on + strand, within IAI46_01440 at 318.951 kb on - strand, within IAI46_01440 at 318.959 kb on + strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.960 kb on - strand, within IAI46_01440 at 318.961 kb on + strand, within IAI46_01440 at 318.962 kb on - strand, within IAI46_01440 at 318.999 kb on + strand, within IAI46_01440 at 319.000 kb on - strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.014 kb on + strand, within IAI46_01440 at 319.015 kb on - strand at 319.070 kb on - strand at 319.135 kb on + strand at 319.135 kb on + strand at 319.148 kb on + strand at 319.149 kb on - strand at 319.149 kb on - strand at 319.151 kb on + strand at 319.151 kb on + strand at 319.152 kb on - strand at 319.152 kb on - strand at 319.152 kb on - strand at 319.165 kb on + strand at 319.165 kb on + strand at 319.166 kb on - strand at 319.166 kb on - strand at 319.168 kb on + strand at 319.174 kb on - strand at 319.174 kb on - strand at 319.180 kb on + strand at 319.180 kb on + strand at 319.180 kb on + strand at 319.181 kb on - strand at 319.184 kb on + strand at 319.185 kb on - strand at 319.185 kb on - strand at 319.185 kb on - strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.217 kb on + strand at 319.218 kb on - strand at 319.228 kb on - strand at 319.283 kb on + strand at 319.318 kb on + strand at 319.319 kb on - strand at 319.319 kb on - strand at 319.319 kb on - strand at 319.326 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.389 kb on - strand at 319.414 kb on + strand at 319.415 kb on - strand at 319.418 kb on - strand at 319.418 kb on - strand at 319.493 kb on + strand at 319.534 kb on + strand at 319.535 kb on - strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.560 kb on + strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.561 kb on - strand at 319.671 kb on + strand at 319.671 kb on + strand at 319.695 kb on - strand at 319.709 kb on + strand at 319.710 kb on - strand at 319.776 kb on - strand at 319.779 kb on - strand at 319.779 kb on - strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.864 kb on + strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.865 kb on - strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.870 kb on + strand at 319.871 kb on - strand at 319.871 kb on - strand at 319.936 kb on - strand at 319.973 kb on - strand, within IAI46_01445 at 319.973 kb on - strand, within IAI46_01445 at 320.005 kb on - strand, within IAI46_01445 at 320.010 kb on + strand, within IAI46_01445 at 320.044 kb on - strand, within IAI46_01445
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 316,988 + IAI46_01435 0.62 +0.3 317,018 + IAI46_01435 0.63 +0.2 317,058 - IAI46_01435 0.65 +0.7 317,078 - IAI46_01435 0.65 +0.2 317,078 - IAI46_01435 0.65 +0.8 317,083 + IAI46_01435 0.66 +0.4 317,151 + IAI46_01435 0.68 -0.2 317,151 + IAI46_01435 0.68 +0.4 317,151 + IAI46_01435 0.68 -0.4 317,151 + IAI46_01435 0.68 +0.2 317,151 + IAI46_01435 0.68 +0.9 317,152 - IAI46_01435 0.68 +0.3 317,152 - IAI46_01435 0.68 -0.0 317,211 + IAI46_01435 0.71 +1.4 317,222 + IAI46_01435 0.71 +0.8 317,222 + IAI46_01435 0.71 +0.9 317,231 + IAI46_01435 0.71 +0.2 317,232 - IAI46_01435 0.71 -0.7 317,348 + IAI46_01435 0.76 +0.0 317,348 + IAI46_01435 0.76 -0.9 317,348 + IAI46_01435 0.76 +0.7 317,348 + IAI46_01435 0.76 +0.5 317,349 - IAI46_01435 0.76 +0.5 317,349 - IAI46_01435 0.76 -0.9 317,349 - IAI46_01435 0.76 -0.6 317,405 + IAI46_01435 0.78 +0.4 317,406 - IAI46_01435 0.78 -0.6 317,528 + IAI46_01435 0.83 -0.0 317,529 - IAI46_01435 0.83 +0.2 317,558 + IAI46_01435 0.84 +0.0 317,559 - IAI46_01435 0.84 -0.2 317,587 + IAI46_01435 0.85 -0.3 317,588 - IAI46_01435 0.85 -0.1 317,622 + IAI46_01435 0.87 +0.7 317,640 + IAI46_01435 0.88 -0.3 317,640 + IAI46_01435 0.88 +0.8 317,641 - IAI46_01435 0.88 +0.4 317,729 + -0.3 317,730 - +0.9 317,730 - -0.8 317,730 - +0.4 317,733 + +0.3 317,734 - +0.6 317,816 - +1.2 317,816 - -0.7 317,858 - +0.3 317,860 + -0.2 317,860 + +0.1 317,860 + -0.1 317,860 + -0.6 317,861 - +0.3 317,861 - +0.1 317,861 - +0.2 317,861 - -0.1 317,875 + -0.5 317,875 + -0.3 317,970 - -0.5 318,152 + IAI46_01440 0.16 +0.6 318,168 - IAI46_01440 0.17 -1.4 318,168 - IAI46_01440 0.17 +0.5 318,418 + IAI46_01440 0.39 +0.5 318,418 + IAI46_01440 0.39 +0.3 318,482 + IAI46_01440 0.44 -1.3 318,482 + IAI46_01440 0.44 +0.1 318,486 + IAI46_01440 0.45 -0.1 318,486 + IAI46_01440 0.45 -0.1 318,487 - IAI46_01440 0.45 +0.4 318,487 - IAI46_01440 0.45 -0.3 318,504 + IAI46_01440 0.46 +0.3 318,504 + IAI46_01440 0.46 +0.1 318,504 + IAI46_01440 0.46 +0.0 318,504 + IAI46_01440 0.46 +0.2 318,505 - IAI46_01440 0.46 -0.4 318,505 - IAI46_01440 0.46 -0.1 318,505 - IAI46_01440 0.46 +0.8 318,505 - IAI46_01440 0.46 +0.6 318,505 - IAI46_01440 0.46 -0.1 318,506 + IAI46_01440 0.46 -1.7 318,506 + IAI46_01440 0.46 +0.6 318,506 + IAI46_01440 0.46 -0.1 318,506 + IAI46_01440 0.46 +0.5 318,507 - IAI46_01440 0.46 +1.7 318,507 - IAI46_01440 0.46 +0.4 318,507 - IAI46_01440 0.46 -0.4 318,507 - IAI46_01440 0.46 +0.7 318,508 + IAI46_01440 0.46 +0.2 318,508 + IAI46_01440 0.46 +0.8 318,508 + IAI46_01440 0.46 +0.4 318,508 + IAI46_01440 0.46 +1.4 318,508 + IAI46_01440 0.46 -0.4 318,508 + IAI46_01440 0.46 +0.1 318,508 + IAI46_01440 0.46 -0.5 318,508 + IAI46_01440 0.46 +0.2 318,509 - IAI46_01440 0.46 +0.3 318,509 - IAI46_01440 0.46 +0.3 318,509 - IAI46_01440 0.46 -0.1 318,509 - IAI46_01440 0.46 -0.4 318,549 + IAI46_01440 0.50 +0.6 318,549 + IAI46_01440 0.50 +0.2 318,550 - IAI46_01440 0.50 +0.2 318,550 - IAI46_01440 0.50 +0.8 318,550 - IAI46_01440 0.50 +0.5 318,576 + IAI46_01440 0.52 +0.1 318,701 + IAI46_01440 0.63 -0.2 318,701 + IAI46_01440 0.63 -0.0 318,702 - IAI46_01440 0.63 +0.7 318,702 - IAI46_01440 0.63 -0.8 318,702 - IAI46_01440 0.63 +0.1 318,702 - IAI46_01440 0.63 -0.6 318,702 - IAI46_01440 0.63 -0.1 318,706 - IAI46_01440 0.63 +0.7 318,801 + IAI46_01440 0.72 +0.1 318,801 + IAI46_01440 0.72 +1.0 318,802 - IAI46_01440 0.72 -0.1 318,819 + IAI46_01440 0.73 +0.7 318,830 + IAI46_01440 0.74 -0.0 318,830 + IAI46_01440 0.74 +0.1 318,831 - IAI46_01440 0.74 -1.2 318,876 + IAI46_01440 0.78 +0.3 318,877 - IAI46_01440 0.78 +0.1 318,877 - IAI46_01440 0.78 -0.2 318,888 + IAI46_01440 0.79 +0.2 318,889 - IAI46_01440 0.79 -0.5 318,913 + IAI46_01440 0.81 -0.9 318,914 - IAI46_01440 0.81 +0.3 318,950 + IAI46_01440 0.84 -0.7 318,951 - IAI46_01440 0.84 -0.9 318,959 + IAI46_01440 0.85 +1.1 318,960 - IAI46_01440 0.85 +1.0 318,960 - IAI46_01440 0.85 +1.3 318,960 - IAI46_01440 0.85 +0.3 318,961 + IAI46_01440 0.85 +0.1 318,962 - IAI46_01440 0.85 -0.0 318,999 + IAI46_01440 0.89 -0.5 319,000 - IAI46_01440 0.89 +0.4 319,014 + IAI46_01440 0.90 -0.5 319,014 + IAI46_01440 0.90 +0.0 319,014 + IAI46_01440 0.90 +0.3 319,014 + IAI46_01440 0.90 -0.7 319,015 - +0.1 319,070 - +0.2 319,135 + +0.2 319,135 + +0.1 319,148 + +0.2 319,149 - -0.1 319,149 - +1.1 319,151 + -0.4 319,151 + -0.3 319,152 - +0.6 319,152 - -0.3 319,152 - -0.1 319,165 + -0.1 319,165 + -0.1 319,166 - +0.1 319,166 - -0.5 319,168 + +0.2 319,174 - -0.1 319,174 - +0.2 319,180 + -0.3 319,180 + +0.7 319,180 + -0.1 319,181 - -0.0 319,184 + -0.0 319,185 - -0.2 319,185 - +0.4 319,185 - +0.2 319,217 + +0.3 319,217 + +0.2 319,217 + +1.0 319,217 + -0.3 319,218 - -0.9 319,228 - -0.0 319,283 + +0.2 319,318 + -0.1 319,319 - +0.5 319,319 - +0.8 319,319 - -1.0 319,326 + +1.1 319,388 + -1.5 319,388 + +0.3 319,388 + -0.3 319,389 - -0.4 319,414 + -0.1 319,415 - +0.4 319,418 - +0.2 319,418 - +0.1 319,493 + +0.5 319,534 + -0.0 319,535 - +0.1 319,560 + +0.6 319,560 + +0.2 319,560 + -0.1 319,560 + +0.4 319,560 + +1.9 319,560 + -0.3 319,560 + -0.2 319,560 + +0.3 319,560 + +0.8 319,561 - +0.3 319,561 - -2.1 319,561 - -0.0 319,561 - +1.3 319,671 + +0.7 319,671 + -0.4 319,695 - +0.6 319,709 + +0.3 319,710 - -0.7 319,776 - -0.8 319,779 - -0.4 319,779 - +0.4 319,864 + +0.2 319,864 + +0.8 319,864 + +0.0 319,864 + -1.3 319,864 + -0.5 319,864 + -0.5 319,864 + -0.4 319,864 + +1.6 319,865 - -0.1 319,865 - +1.0 319,865 - -0.6 319,865 - +0.6 319,865 - +0.5 319,865 - -0.3 319,865 - -0.2 319,865 - +0.2 319,870 + +0.5 319,870 + +1.1 319,870 + -0.6 319,870 + -0.6 319,870 + +0.7 319,871 - -0.3 319,871 - +1.4 319,936 - -0.9 319,973 - IAI46_01445 0.13 +0.2 319,973 - IAI46_01445 0.13 +0.1 320,005 - IAI46_01445 0.15 -1.0 320,010 + IAI46_01445 0.16 -0.5 320,044 - IAI46_01445 0.19 -0.1
Or see this region's nucleotide sequence