Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00960 and IAI46_00965 are separated by 283 nucleotides IAI46_00965 and IAI46_00970 overlap by 4 nucleotides
IAI46_00960: IAI46_00960 - branched-chain amino acid ABC transporter substrate-binding protein, at 214,993 to 216,108
_00960
IAI46_00965: IAI46_00965 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 216,392 to 217,318
_00965
IAI46_00970: IAI46_00970 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 217,315 to 218,598
_00970
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.412 kb on + strand, within IAI46_00960 at 215.412 kb on + strand, within IAI46_00960 at 215.412 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.456 kb on - strand, within IAI46_00960 at 215.513 kb on - strand, within IAI46_00960 at 215.586 kb on + strand, within IAI46_00960 at 215.656 kb on + strand, within IAI46_00960 at 215.656 kb on + strand, within IAI46_00960 at 215.730 kb on + strand, within IAI46_00960 at 215.770 kb on - strand, within IAI46_00960 at 215.812 kb on - strand, within IAI46_00960 at 215.812 kb on - strand, within IAI46_00960 at 215.819 kb on - strand, within IAI46_00960 at 215.819 kb on - strand, within IAI46_00960 at 215.859 kb on + strand, within IAI46_00960 at 215.905 kb on + strand, within IAI46_00960 at 215.905 kb on + strand, within IAI46_00960 at 216.046 kb on - strand at 216.106 kb on + strand at 216.107 kb on - strand at 216.110 kb on - strand at 216.110 kb on - strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.112 kb on - strand at 216.168 kb on + strand at 216.168 kb on + strand at 216.168 kb on + strand at 216.169 kb on - strand at 216.169 kb on - strand at 216.173 kb on + strand at 216.174 kb on - strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.177 kb on - strand at 216.177 kb on - strand at 216.192 kb on + strand at 216.193 kb on - strand at 216.208 kb on - strand at 216.232 kb on + strand at 216.233 kb on - strand at 216.234 kb on + strand at 216.245 kb on - strand at 216.280 kb on - strand at 216.364 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.367 kb on - strand at 216.386 kb on + strand at 216.387 kb on - strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.476 kb on + strand at 216.488 kb on + strand, within IAI46_00965 at 216.488 kb on + strand, within IAI46_00965 at 216.488 kb on + strand, within IAI46_00965 at 216.489 kb on - strand, within IAI46_00965 at 216.489 kb on - strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.557 kb on - strand, within IAI46_00965 at 216.650 kb on + strand, within IAI46_00965 at 216.726 kb on + strand, within IAI46_00965 at 216.752 kb on + strand, within IAI46_00965 at 216.847 kb on + strand, within IAI46_00965 at 216.848 kb on - strand, within IAI46_00965 at 216.868 kb on + strand, within IAI46_00965 at 216.868 kb on + strand, within IAI46_00965 at 216.869 kb on - strand, within IAI46_00965 at 216.928 kb on + strand, within IAI46_00965 at 216.929 kb on - strand, within IAI46_00965 at 217.054 kb on - strand, within IAI46_00965 at 217.070 kb on + strand, within IAI46_00965 at 217.070 kb on + strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.089 kb on - strand, within IAI46_00965 at 217.089 kb on - strand, within IAI46_00965 at 217.090 kb on + strand, within IAI46_00965 at 217.179 kb on + strand, within IAI46_00965 at 217.180 kb on - strand, within IAI46_00965 at 217.228 kb on + strand at 217.228 kb on + strand at 217.228 kb on + strand at 217.228 kb on + strand at 217.229 kb on - strand at 217.229 kb on - strand at 217.315 kb on - strand at 217.545 kb on - strand, within IAI46_00970 at 217.547 kb on + strand, within IAI46_00970 at 217.646 kb on + strand, within IAI46_00970 at 217.647 kb on - strand, within IAI46_00970 at 217.672 kb on + strand, within IAI46_00970 at 217.673 kb on - strand, within IAI46_00970 at 217.673 kb on - strand, within IAI46_00970 at 217.762 kb on + strand, within IAI46_00970 at 217.763 kb on - strand, within IAI46_00970 at 217.763 kb on - strand, within IAI46_00970 at 217.768 kb on + strand, within IAI46_00970 at 217.768 kb on + strand, within IAI46_00970 at 217.768 kb on + strand, within IAI46_00970 at 217.768 kb on + strand, within IAI46_00970 at 217.769 kb on - strand, within IAI46_00970 at 217.786 kb on + strand, within IAI46_00970 at 217.786 kb on + strand, within IAI46_00970 at 217.787 kb on - strand, within IAI46_00970 at 217.789 kb on + strand, within IAI46_00970 at 217.790 kb on - strand, within IAI46_00970 at 217.888 kb on + strand, within IAI46_00970 at 217.889 kb on - strand, within IAI46_00970 at 218.055 kb on + strand, within IAI46_00970 at 218.056 kb on - strand, within IAI46_00970 at 218.056 kb on - strand, within IAI46_00970 at 218.075 kb on - strand, within IAI46_00970 at 218.075 kb on - strand, within IAI46_00970 at 218.259 kb on + strand, within IAI46_00970 at 218.259 kb on + strand, within IAI46_00970 at 218.259 kb on + strand, within IAI46_00970
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 215,412 + IAI46_00960 0.38 -0.1 215,412 + IAI46_00960 0.38 -0.3 215,412 + IAI46_00960 0.38 -0.3 215,455 + IAI46_00960 0.41 +0.6 215,455 + IAI46_00960 0.41 -0.1 215,455 + IAI46_00960 0.41 -0.2 215,455 + IAI46_00960 0.41 -0.3 215,455 + IAI46_00960 0.41 -0.1 215,455 + IAI46_00960 0.41 -0.7 215,455 + IAI46_00960 0.41 +0.6 215,456 - IAI46_00960 0.41 +0.0 215,513 - IAI46_00960 0.47 -1.8 215,586 + IAI46_00960 0.53 +0.2 215,656 + IAI46_00960 0.59 +0.1 215,656 + IAI46_00960 0.59 +0.3 215,730 + IAI46_00960 0.66 -0.1 215,770 - IAI46_00960 0.70 +0.2 215,812 - IAI46_00960 0.73 -0.5 215,812 - IAI46_00960 0.73 -0.5 215,819 - IAI46_00960 0.74 -0.5 215,819 - IAI46_00960 0.74 -0.3 215,859 + IAI46_00960 0.78 +0.5 215,905 + IAI46_00960 0.82 -0.5 215,905 + IAI46_00960 0.82 -0.5 216,046 - +0.4 216,106 + +0.4 216,107 - -0.4 216,110 - +0.1 216,110 - +1.0 216,111 + +0.0 216,111 + +1.4 216,111 + -0.6 216,111 + +0.3 216,112 - +0.1 216,168 + +0.8 216,168 + +0.6 216,168 + -0.1 216,169 - -0.4 216,169 - +0.3 216,173 + +0.2 216,174 - +0.6 216,176 + +0.9 216,176 + +0.6 216,176 + +0.4 216,176 + -0.2 216,177 - -0.3 216,177 - +1.0 216,192 + +0.5 216,193 - +0.7 216,208 - +0.5 216,232 + -0.0 216,233 - -0.5 216,234 + -0.2 216,245 - +0.2 216,280 - +0.4 216,364 + -0.6 216,366 + -0.8 216,366 + +0.8 216,366 + +0.1 216,366 + +0.1 216,367 - +0.4 216,386 + +0.3 216,387 - +0.5 216,391 + -0.3 216,391 + +0.9 216,391 + +0.4 216,391 + -1.0 216,391 + +0.3 216,391 + -0.5 216,392 - -0.1 216,392 - -0.1 216,392 - +0.2 216,392 - +2.6 216,455 + -1.1 216,455 + -0.0 216,455 + +0.4 216,455 + -0.5 216,455 + +0.2 216,455 + +0.6 216,455 + +0.3 216,455 + +0.5 216,456 - -1.4 216,456 - +1.4 216,456 - +0.5 216,456 - +0.6 216,476 + -0.2 216,488 + IAI46_00965 0.10 -0.1 216,488 + IAI46_00965 0.10 +0.5 216,488 + IAI46_00965 0.10 +0.5 216,489 - IAI46_00965 0.10 +0.3 216,489 - IAI46_00965 0.10 +0.1 216,530 + IAI46_00965 0.15 -0.7 216,530 + IAI46_00965 0.15 -1.1 216,530 + IAI46_00965 0.15 +0.7 216,530 + IAI46_00965 0.15 -1.2 216,530 + IAI46_00965 0.15 -1.3 216,530 + IAI46_00965 0.15 +0.1 216,530 + IAI46_00965 0.15 -0.5 216,531 - IAI46_00965 0.15 +0.4 216,531 - IAI46_00965 0.15 -0.5 216,531 - IAI46_00965 0.15 -0.3 216,531 - IAI46_00965 0.15 -0.2 216,531 - IAI46_00965 0.15 -0.9 216,531 - IAI46_00965 0.15 +1.2 216,531 - IAI46_00965 0.15 +0.3 216,531 - IAI46_00965 0.15 -0.3 216,531 - IAI46_00965 0.15 +0.7 216,531 - IAI46_00965 0.15 +0.6 216,531 - IAI46_00965 0.15 +0.6 216,532 + IAI46_00965 0.15 +0.9 216,532 + IAI46_00965 0.15 +1.0 216,532 + IAI46_00965 0.15 +0.1 216,532 + IAI46_00965 0.15 -0.1 216,532 + IAI46_00965 0.15 -0.8 216,532 + IAI46_00965 0.15 +0.1 216,532 + IAI46_00965 0.15 -0.1 216,532 + IAI46_00965 0.15 +0.5 216,533 - IAI46_00965 0.15 +0.3 216,533 - IAI46_00965 0.15 -0.7 216,533 - IAI46_00965 0.15 +0.0 216,533 - IAI46_00965 0.15 +1.2 216,533 - IAI46_00965 0.15 +1.5 216,533 - IAI46_00965 0.15 -0.1 216,545 + IAI46_00965 0.17 +0.3 216,545 + IAI46_00965 0.17 -0.6 216,545 + IAI46_00965 0.17 +0.6 216,545 + IAI46_00965 0.17 +0.2 216,545 + IAI46_00965 0.17 -0.2 216,545 + IAI46_00965 0.17 -1.2 216,545 + IAI46_00965 0.17 -1.4 216,546 - IAI46_00965 0.17 +0.1 216,546 - IAI46_00965 0.17 +0.1 216,546 - IAI46_00965 0.17 -0.2 216,546 - IAI46_00965 0.17 -0.8 216,546 - IAI46_00965 0.17 -0.4 216,546 - IAI46_00965 0.17 -1.4 216,546 - IAI46_00965 0.17 -0.3 216,557 - IAI46_00965 0.18 -0.7 216,650 + IAI46_00965 0.28 +0.2 216,726 + IAI46_00965 0.36 -1.2 216,752 + IAI46_00965 0.39 +0.3 216,847 + IAI46_00965 0.49 -0.8 216,848 - IAI46_00965 0.49 -1.3 216,868 + IAI46_00965 0.51 +0.1 216,868 + IAI46_00965 0.51 -0.7 216,869 - IAI46_00965 0.51 -1.8 216,928 + IAI46_00965 0.58 +0.5 216,929 - IAI46_00965 0.58 +0.2 217,054 - IAI46_00965 0.71 +0.4 217,070 + IAI46_00965 0.73 +0.8 217,070 + IAI46_00965 0.73 +0.0 217,071 - IAI46_00965 0.73 -0.3 217,071 - IAI46_00965 0.73 +0.3 217,071 - IAI46_00965 0.73 +0.4 217,089 - IAI46_00965 0.75 -0.0 217,089 - IAI46_00965 0.75 +0.2 217,090 + IAI46_00965 0.75 +2.1 217,179 + IAI46_00965 0.85 +0.4 217,180 - IAI46_00965 0.85 +0.6 217,228 + -0.6 217,228 + -0.1 217,228 + +1.0 217,228 + -0.1 217,229 - +0.5 217,229 - +0.1 217,315 - +0.5 217,545 - IAI46_00970 0.18 +0.8 217,547 + IAI46_00970 0.18 +0.4 217,646 + IAI46_00970 0.26 -0.1 217,647 - IAI46_00970 0.26 -0.4 217,672 + IAI46_00970 0.28 +0.2 217,673 - IAI46_00970 0.28 -0.1 217,673 - IAI46_00970 0.28 -1.6 217,762 + IAI46_00970 0.35 +0.7 217,763 - IAI46_00970 0.35 +1.0 217,763 - IAI46_00970 0.35 +0.2 217,768 + IAI46_00970 0.35 +0.0 217,768 + IAI46_00970 0.35 -0.1 217,768 + IAI46_00970 0.35 +0.1 217,768 + IAI46_00970 0.35 +1.1 217,769 - IAI46_00970 0.35 +0.2 217,786 + IAI46_00970 0.37 +0.7 217,786 + IAI46_00970 0.37 -0.3 217,787 - IAI46_00970 0.37 -0.4 217,789 + IAI46_00970 0.37 +0.1 217,790 - IAI46_00970 0.37 -0.6 217,888 + IAI46_00970 0.45 +0.2 217,889 - IAI46_00970 0.45 -0.9 218,055 + IAI46_00970 0.58 -0.3 218,056 - IAI46_00970 0.58 -0.2 218,056 - IAI46_00970 0.58 -0.1 218,075 - IAI46_00970 0.59 -0.9 218,075 - IAI46_00970 0.59 +0.2 218,259 + IAI46_00970 0.74 -0.8 218,259 + IAI46_00970 0.74 -1.9 218,259 + IAI46_00970 0.74 -0.5
Or see this region's nucleotide sequence