Strain Fitness in Serratia liquefaciens MT49 around IAI46_00690

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00685 and IAI46_00690 are separated by 17 nucleotidesIAI46_00690 and IAI46_00695 overlap by 4 nucleotides IAI46_00685: IAI46_00685 - uroporphyrinogen-III C-methyltransferase, at 157,679 to 158,803 _00685 IAI46_00690: IAI46_00690 - uroporphyrinogen-III synthase, at 158,821 to 159,567 _00690 IAI46_00695: IAI46_00695 - hydroxymethylbilane synthase, at 159,564 to 160,505 _00695 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 157.860 kb on + strand, within IAI46_00685at 157.860 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.900 kb on + strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.901 kb on - strand, within IAI46_00685at 157.903 kb on - strand, within IAI46_00685at 157.903 kb on - strand, within IAI46_00685at 157.974 kb on + strand, within IAI46_00685at 157.974 kb on + strand, within IAI46_00685at 157.975 kb on - strand, within IAI46_00685at 157.975 kb on - strand, within IAI46_00685at 158.015 kb on - strand, within IAI46_00685at 158.033 kb on - strand, within IAI46_00685at 158.035 kb on + strand, within IAI46_00685at 158.036 kb on - strand, within IAI46_00685at 158.047 kb on + strand, within IAI46_00685at 158.165 kb on - strand, within IAI46_00685at 158.239 kb on + strand, within IAI46_00685at 158.240 kb on - strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.365 kb on + strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.366 kb on - strand, within IAI46_00685at 158.434 kb on + strand, within IAI46_00685at 158.434 kb on + strand, within IAI46_00685at 158.435 kb on - strand, within IAI46_00685at 158.435 kb on - strand, within IAI46_00685at 158.438 kb on - strand, within IAI46_00685at 158.635 kb on + strand, within IAI46_00685at 158.635 kb on + strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.636 kb on - strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.640 kb on + strand, within IAI46_00685at 158.641 kb on - strand, within IAI46_00685at 158.643 kb on + strand, within IAI46_00685at 158.644 kb on - strand, within IAI46_00685at 158.644 kb on - strand, within IAI46_00685at 158.711 kb on - strandat 158.716 kb on + strandat 158.789 kb on - strandat 158.789 kb on - strandat 158.804 kb on - strandat 158.804 kb on - strandat 158.819 kb on - strandat 159.587 kb on - strandat 159.587 kb on - strandat 160.513 kb on - strandat 160.522 kb on - strandat 160.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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157,860 + IAI46_00685 0.16 -0.4
157,860 + IAI46_00685 0.16 +1.1
157,900 + IAI46_00685 0.20 +1.5
157,900 + IAI46_00685 0.20 -0.0
157,900 + IAI46_00685 0.20 +1.4
157,900 + IAI46_00685 0.20 -0.5
157,901 - IAI46_00685 0.20 +0.7
157,901 - IAI46_00685 0.20 -0.1
157,901 - IAI46_00685 0.20 +0.5
157,901 - IAI46_00685 0.20 +0.5
157,903 - IAI46_00685 0.20 +0.8
157,903 - IAI46_00685 0.20 +0.3
157,974 + IAI46_00685 0.26 +0.3
157,974 + IAI46_00685 0.26 +0.5
157,975 - IAI46_00685 0.26 -1.1
157,975 - IAI46_00685 0.26 -0.0
158,015 - IAI46_00685 0.30 +0.6
158,033 - IAI46_00685 0.31 +0.2
158,035 + IAI46_00685 0.32 +0.5
158,036 - IAI46_00685 0.32 +0.0
158,047 + IAI46_00685 0.33 +0.8
158,165 - IAI46_00685 0.43 -0.5
158,239 + IAI46_00685 0.50 -0.4
158,240 - IAI46_00685 0.50 +1.1
158,365 + IAI46_00685 0.61 +0.3
158,365 + IAI46_00685 0.61 +1.6
158,365 + IAI46_00685 0.61 -0.0
158,366 - IAI46_00685 0.61 +0.3
158,366 - IAI46_00685 0.61 -0.4
158,366 - IAI46_00685 0.61 -0.0
158,434 + IAI46_00685 0.67 -0.5
158,434 + IAI46_00685 0.67 +0.8
158,435 - IAI46_00685 0.67 +1.0
158,435 - IAI46_00685 0.67 -0.0
158,438 - IAI46_00685 0.67 -2.2
158,635 + IAI46_00685 0.85 -0.4
158,635 + IAI46_00685 0.85 -0.4
158,636 - IAI46_00685 0.85 +0.4
158,636 - IAI46_00685 0.85 -0.8
158,636 - IAI46_00685 0.85 -0.1
158,636 - IAI46_00685 0.85 +0.7
158,636 - IAI46_00685 0.85 +1.1
158,640 + IAI46_00685 0.85 +1.0
158,640 + IAI46_00685 0.85 -0.6
158,640 + IAI46_00685 0.85 -0.1
158,641 - IAI46_00685 0.86 +1.6
158,643 + IAI46_00685 0.86 +0.5
158,644 - IAI46_00685 0.86 +0.3
158,644 - IAI46_00685 0.86 +1.0
158,711 - +1.3
158,716 + -1.5
158,789 - +0.8
158,789 - -0.3
158,804 - +0.0
158,804 - +0.6
158,819 - -0.1
159,587 - +0.1
159,587 - -1.1
160,513 - +0.5
160,522 - -0.2
160,541 - +0.6

Or see this region's nucleotide sequence