Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00635 and IAI46_00640 overlap by 4 nucleotides IAI46_00640 and IAI46_00645 are separated by 14 nucleotides
IAI46_00635: IAI46_00635 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 149,894 to 150,979
_00635
IAI46_00640: IAI46_00640 - ECA oligosaccharide polymerase, at 150,976 to 152,352
_00640
IAI46_00645: IAI46_00645 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 152,367 to 153,107
_00645
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 150.011 kb on - strand, within IAI46_00635 at 150.011 kb on - strand, within IAI46_00635 at 150.164 kb on - strand, within IAI46_00635 at 150.164 kb on - strand, within IAI46_00635 at 150.164 kb on - strand, within IAI46_00635 at 150.221 kb on - strand, within IAI46_00635 at 150.221 kb on - strand, within IAI46_00635 at 150.275 kb on + strand, within IAI46_00635 at 150.275 kb on + strand, within IAI46_00635 at 150.276 kb on - strand, within IAI46_00635 at 150.334 kb on + strand, within IAI46_00635 at 150.335 kb on - strand, within IAI46_00635 at 150.337 kb on + strand, within IAI46_00635 at 150.337 kb on + strand, within IAI46_00635 at 150.337 kb on + strand, within IAI46_00635 at 150.338 kb on - strand, within IAI46_00635 at 150.344 kb on + strand, within IAI46_00635 at 150.344 kb on + strand, within IAI46_00635 at 150.344 kb on + strand, within IAI46_00635 at 150.383 kb on + strand, within IAI46_00635 at 150.384 kb on - strand, within IAI46_00635 at 150.427 kb on - strand, within IAI46_00635 at 150.494 kb on - strand, within IAI46_00635 at 150.494 kb on - strand, within IAI46_00635 at 150.581 kb on + strand, within IAI46_00635 at 150.581 kb on + strand, within IAI46_00635 at 150.582 kb on - strand, within IAI46_00635 at 150.582 kb on - strand, within IAI46_00635 at 150.582 kb on - strand, within IAI46_00635 at 150.582 kb on - strand, within IAI46_00635 at 150.583 kb on + strand, within IAI46_00635 at 150.583 kb on + strand, within IAI46_00635 at 150.584 kb on - strand, within IAI46_00635 at 150.584 kb on - strand, within IAI46_00635 at 150.594 kb on + strand, within IAI46_00635 at 150.610 kb on - strand, within IAI46_00635 at 150.676 kb on + strand, within IAI46_00635 at 150.701 kb on + strand, within IAI46_00635 at 150.701 kb on + strand, within IAI46_00635 at 150.713 kb on - strand, within IAI46_00635 at 150.729 kb on + strand, within IAI46_00635 at 150.833 kb on + strand, within IAI46_00635 at 150.834 kb on - strand, within IAI46_00635 at 150.922 kb on + strand at 150.922 kb on + strand at 150.926 kb on + strand at 150.926 kb on + strand at 150.926 kb on + strand at 150.926 kb on + strand at 150.927 kb on - strand at 150.927 kb on - strand at 150.927 kb on - strand at 150.975 kb on + strand at 150.975 kb on + strand at 150.975 kb on + strand at 150.976 kb on - strand at 150.976 kb on - strand at 150.976 kb on - strand at 151.006 kb on - strand at 151.032 kb on + strand at 151.049 kb on - strand at 151.049 kb on - strand at 151.188 kb on - strand, within IAI46_00640 at 151.229 kb on - strand, within IAI46_00640 at 151.240 kb on + strand, within IAI46_00640 at 151.240 kb on + strand, within IAI46_00640 at 151.240 kb on + strand, within IAI46_00640 at 151.241 kb on - strand, within IAI46_00640 at 151.243 kb on - strand, within IAI46_00640 at 151.278 kb on + strand, within IAI46_00640 at 151.460 kb on - strand, within IAI46_00640 at 151.489 kb on + strand, within IAI46_00640 at 151.490 kb on - strand, within IAI46_00640 at 151.562 kb on - strand, within IAI46_00640 at 151.569 kb on - strand, within IAI46_00640 at 151.569 kb on - strand, within IAI46_00640 at 151.597 kb on - strand, within IAI46_00640 at 151.750 kb on - strand, within IAI46_00640 at 151.774 kb on - strand, within IAI46_00640 at 151.951 kb on - strand, within IAI46_00640 at 152.020 kb on - strand, within IAI46_00640 at 152.105 kb on - strand, within IAI46_00640 at 152.252 kb on - strand at 152.281 kb on - strand at 152.298 kb on + strand at 152.350 kb on + strand at 152.351 kb on - strand at 152.359 kb on + strand at 152.359 kb on + strand at 152.359 kb on + strand at 152.359 kb on + strand at 152.359 kb on + strand at 152.359 kb on + strand at 152.363 kb on - strand at 152.527 kb on + strand, within IAI46_00645 at 152.531 kb on + strand, within IAI46_00645 at 152.531 kb on + strand, within IAI46_00645 at 152.532 kb on - strand, within IAI46_00645 at 152.532 kb on - strand, within IAI46_00645 at 152.566 kb on - strand, within IAI46_00645 at 152.571 kb on + strand, within IAI46_00645 at 152.571 kb on + strand, within IAI46_00645 at 152.572 kb on - strand, within IAI46_00645 at 152.572 kb on - strand, within IAI46_00645 at 152.594 kb on - strand, within IAI46_00645 at 152.609 kb on + strand, within IAI46_00645 at 152.613 kb on + strand, within IAI46_00645 at 152.629 kb on + strand, within IAI46_00645 at 152.767 kb on + strand, within IAI46_00645 at 152.768 kb on - strand, within IAI46_00645 at 152.910 kb on - strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.931 kb on + strand, within IAI46_00645 at 152.932 kb on - strand, within IAI46_00645 at 152.932 kb on - strand, within IAI46_00645 at 152.932 kb on - strand, within IAI46_00645 at 152.932 kb on - strand, within IAI46_00645 at 152.932 kb on - strand, within IAI46_00645 at 152.933 kb on + strand, within IAI46_00645 at 152.952 kb on + strand, within IAI46_00645 at 152.952 kb on + strand, within IAI46_00645 at 152.952 kb on + strand, within IAI46_00645 at 152.953 kb on - strand, within IAI46_00645 at 152.953 kb on - strand, within IAI46_00645 at 152.953 kb on - strand, within IAI46_00645 at 152.953 kb on - strand, within IAI46_00645 at 152.953 kb on - strand, within IAI46_00645 at 153.022 kb on - strand, within IAI46_00645 at 153.031 kb on + strand, within IAI46_00645 at 153.031 kb on + strand, within IAI46_00645 at 153.062 kb on + strand at 153.085 kb on - strand at 153.087 kb on + strand at 153.087 kb on + strand at 153.087 kb on + strand at 153.088 kb on - strand at 153.088 kb on - strand at 153.088 kb on - strand at 153.088 kb on - strand at 153.088 kb on - strand at 153.099 kb on - strand at 153.158 kb on + strand at 153.169 kb on - strand at 153.175 kb on + strand at 153.176 kb on - strand at 153.176 kb on - strand at 153.176 kb on - strand at 153.191 kb on + strand at 153.192 kb on - strand at 153.192 kb on - strand at 153.207 kb on - strand at 153.218 kb on + strand at 153.219 kb on - strand at 153.253 kb on + strand at 153.253 kb on + strand at 153.254 kb on - strand at 153.291 kb on - strand at 153.345 kb on + strand at 153.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 150,011 - IAI46_00635 0.11 +0.9 150,011 - IAI46_00635 0.11 +1.5 150,164 - IAI46_00635 0.25 +0.2 150,164 - IAI46_00635 0.25 +0.9 150,164 - IAI46_00635 0.25 +0.2 150,221 - IAI46_00635 0.30 +0.8 150,221 - IAI46_00635 0.30 +0.5 150,275 + IAI46_00635 0.35 -1.9 150,275 + IAI46_00635 0.35 +0.8 150,276 - IAI46_00635 0.35 -1.9 150,334 + IAI46_00635 0.41 +1.5 150,335 - IAI46_00635 0.41 +0.8 150,337 + IAI46_00635 0.41 +0.9 150,337 + IAI46_00635 0.41 -1.2 150,337 + IAI46_00635 0.41 -0.4 150,338 - IAI46_00635 0.41 +0.5 150,344 + IAI46_00635 0.41 +0.8 150,344 + IAI46_00635 0.41 -0.2 150,344 + IAI46_00635 0.41 +2.2 150,383 + IAI46_00635 0.45 +1.3 150,384 - IAI46_00635 0.45 +0.9 150,427 - IAI46_00635 0.49 +1.5 150,494 - IAI46_00635 0.55 -0.1 150,494 - IAI46_00635 0.55 -0.5 150,581 + IAI46_00635 0.63 +0.5 150,581 + IAI46_00635 0.63 +1.4 150,582 - IAI46_00635 0.63 +0.7 150,582 - IAI46_00635 0.63 +0.2 150,582 - IAI46_00635 0.63 -0.1 150,582 - IAI46_00635 0.63 +0.6 150,583 + IAI46_00635 0.63 +0.3 150,583 + IAI46_00635 0.63 +1.0 150,584 - IAI46_00635 0.64 -1.8 150,584 - IAI46_00635 0.64 +0.0 150,594 + IAI46_00635 0.64 -1.5 150,610 - IAI46_00635 0.66 +0.4 150,676 + IAI46_00635 0.72 +1.5 150,701 + IAI46_00635 0.74 +1.2 150,701 + IAI46_00635 0.74 +1.7 150,713 - IAI46_00635 0.75 +2.8 150,729 + IAI46_00635 0.77 -0.6 150,833 + IAI46_00635 0.86 -1.5 150,834 - IAI46_00635 0.87 -0.4 150,922 + -0.6 150,922 + +1.6 150,926 + +0.6 150,926 + -0.3 150,926 + -0.1 150,926 + +1.7 150,927 - +0.5 150,927 - +0.9 150,927 - -1.2 150,975 + +1.3 150,975 + +1.4 150,975 + +0.3 150,976 - -1.5 150,976 - +0.5 150,976 - +1.6 151,006 - -0.1 151,032 + -0.4 151,049 - +0.5 151,049 - +0.1 151,188 - IAI46_00640 0.15 +0.4 151,229 - IAI46_00640 0.18 +0.1 151,240 + IAI46_00640 0.19 -1.7 151,240 + IAI46_00640 0.19 -0.7 151,240 + IAI46_00640 0.19 -2.3 151,241 - IAI46_00640 0.19 +0.8 151,243 - IAI46_00640 0.19 +1.0 151,278 + IAI46_00640 0.22 -0.7 151,460 - IAI46_00640 0.35 -0.1 151,489 + IAI46_00640 0.37 -0.4 151,490 - IAI46_00640 0.37 +0.9 151,562 - IAI46_00640 0.43 +0.0 151,569 - IAI46_00640 0.43 -0.2 151,569 - IAI46_00640 0.43 -1.5 151,597 - IAI46_00640 0.45 -0.5 151,750 - IAI46_00640 0.56 -0.7 151,774 - IAI46_00640 0.58 -1.5 151,951 - IAI46_00640 0.71 -3.0 152,020 - IAI46_00640 0.76 +0.5 152,105 - IAI46_00640 0.82 -0.7 152,252 - +0.3 152,281 - -0.9 152,298 + -1.4 152,350 + +0.7 152,351 - +0.3 152,359 + -0.1 152,359 + +1.0 152,359 + +0.5 152,359 + -1.1 152,359 + +0.9 152,359 + +0.9 152,363 - -0.4 152,527 + IAI46_00645 0.22 +1.3 152,531 + IAI46_00645 0.22 +0.8 152,531 + IAI46_00645 0.22 -0.3 152,532 - IAI46_00645 0.22 -0.3 152,532 - IAI46_00645 0.22 +1.5 152,566 - IAI46_00645 0.27 -0.5 152,571 + IAI46_00645 0.28 -1.2 152,571 + IAI46_00645 0.28 -0.2 152,572 - IAI46_00645 0.28 +1.8 152,572 - IAI46_00645 0.28 +1.2 152,594 - IAI46_00645 0.31 +1.2 152,609 + IAI46_00645 0.33 +0.9 152,613 + IAI46_00645 0.33 -0.2 152,629 + IAI46_00645 0.35 +1.8 152,767 + IAI46_00645 0.54 +0.6 152,768 - IAI46_00645 0.54 +0.5 152,910 - IAI46_00645 0.73 -1.7 152,931 + IAI46_00645 0.76 -0.7 152,931 + IAI46_00645 0.76 -1.1 152,931 + IAI46_00645 0.76 -1.0 152,931 + IAI46_00645 0.76 +2.0 152,931 + IAI46_00645 0.76 -0.6 152,931 + IAI46_00645 0.76 +1.0 152,931 + IAI46_00645 0.76 -0.9 152,931 + IAI46_00645 0.76 +0.6 152,932 - IAI46_00645 0.76 +1.4 152,932 - IAI46_00645 0.76 +0.1 152,932 - IAI46_00645 0.76 +0.5 152,932 - IAI46_00645 0.76 -0.9 152,932 - IAI46_00645 0.76 +2.1 152,933 + IAI46_00645 0.76 +0.7 152,952 + IAI46_00645 0.79 +0.0 152,952 + IAI46_00645 0.79 +1.6 152,952 + IAI46_00645 0.79 -1.6 152,953 - IAI46_00645 0.79 -0.4 152,953 - IAI46_00645 0.79 +0.1 152,953 - IAI46_00645 0.79 +1.7 152,953 - IAI46_00645 0.79 +1.8 152,953 - IAI46_00645 0.79 -1.9 153,022 - IAI46_00645 0.88 +0.3 153,031 + IAI46_00645 0.90 +0.6 153,031 + IAI46_00645 0.90 +2.1 153,062 + -0.3 153,085 - -0.0 153,087 + -0.6 153,087 + -0.3 153,087 + -0.7 153,088 - +1.0 153,088 - +0.4 153,088 - -0.1 153,088 - +0.3 153,088 - +0.4 153,099 - +1.7 153,158 + -0.9 153,169 - +0.4 153,175 + +0.0 153,176 - +0.1 153,176 - -0.0 153,176 - -0.4 153,191 + -0.1 153,192 - +0.7 153,192 - -0.1 153,207 - +0.2 153,218 + -1.9 153,219 - +0.1 153,253 + +0.3 153,253 + +1.2 153,254 - -0.6 153,291 - +0.3 153,345 + -0.7 153,346 - -0.0
Or see this region's nucleotide sequence