Strain Fitness in Serratia liquefaciens MT49 around IAI46_00580

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00575 and IAI46_00580 are separated by 117 nucleotidesIAI46_00580 and IAI46_00585 are separated by 577 nucleotides IAI46_00575: IAI46_00575 - ATP-dependent RNA helicase RhlB, at 136,295 to 137,581 _00575 IAI46_00580: IAI46_00580 - thioredoxin TrxA, at 137,699 to 138,025 _00580 IAI46_00585: IAI46_00585 - transcription termination factor Rho, at 138,603 to 139,862 _00585 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 136.733 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.734 kb on - strand, within IAI46_00575at 136.865 kb on - strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.888 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.930 kb on - strand, within IAI46_00575at 136.968 kb on - strand, within IAI46_00575at 136.974 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.140 kb on - strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.161 kb on + strand, within IAI46_00575at 137.227 kb on - strand, within IAI46_00575at 137.384 kb on - strand, within IAI46_00575at 137.391 kb on - strand, within IAI46_00575at 137.602 kb on - strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.674 kb on + strandat 137.675 kb on - strandat 137.693 kb on + strandat 137.693 kb on + strandat 137.708 kb on - strandat 137.714 kb on - strandat 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.924 kb on - strand, within IAI46_00580at 137.929 kb on + strand, within IAI46_00580at 137.969 kb on + strand, within IAI46_00580at 138.023 kb on + strandat 138.041 kb on + strandat 138.041 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.179 kb on + strandat 138.204 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.367 kb on + strandat 138.474 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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136,733 + IAI46_00575 0.34 +1.5
136,733 + IAI46_00575 0.34 +0.2
136,734 - IAI46_00575 0.34 -1.9
136,865 - IAI46_00575 0.44 +0.1
136,872 + IAI46_00575 0.45 -0.5
136,872 + IAI46_00575 0.45 +0.5
136,888 + IAI46_00575 0.46 -0.7
136,929 + IAI46_00575 0.49 -0.2
136,929 + IAI46_00575 0.49 -0.4
136,929 + IAI46_00575 0.49 -1.6
136,930 - IAI46_00575 0.49 -1.2
136,968 - IAI46_00575 0.52 +0.5
136,974 + IAI46_00575 0.53 +0.9
137,070 + IAI46_00575 0.60 +0.9
137,070 + IAI46_00575 0.60 +0.1
137,070 + IAI46_00575 0.60 -0.9
137,071 - IAI46_00575 0.60 -0.0
137,071 - IAI46_00575 0.60 -1.5
137,074 + IAI46_00575 0.61 +0.2
137,074 + IAI46_00575 0.61 +0.6
137,074 + IAI46_00575 0.61 -0.9
137,074 + IAI46_00575 0.61 +0.3
137,075 - IAI46_00575 0.61 -0.2
137,075 - IAI46_00575 0.61 -0.0
137,075 - IAI46_00575 0.61 +0.9
137,124 + IAI46_00575 0.64 -0.4
137,124 + IAI46_00575 0.64 +1.1
137,124 + IAI46_00575 0.64 -1.3
137,124 + IAI46_00575 0.64 +0.5
137,125 - IAI46_00575 0.64 -0.3
137,125 - IAI46_00575 0.64 +0.3
137,125 - IAI46_00575 0.64 -1.6
137,125 - IAI46_00575 0.64 +0.4
137,125 - IAI46_00575 0.64 -0.5
137,140 - IAI46_00575 0.66 +0.8
137,158 + IAI46_00575 0.67 +0.0
137,158 + IAI46_00575 0.67 +0.2
137,161 + IAI46_00575 0.67 +0.8
137,227 - IAI46_00575 0.72 +0.2
137,384 - IAI46_00575 0.85 +0.6
137,391 - IAI46_00575 0.85 -1.2
137,602 - -0.7
137,646 + +0.6
137,646 + -0.2
137,646 + +1.6
137,647 - -0.1
137,647 - +0.2
137,647 - -0.6
137,647 - +0.8
137,674 + +0.2
137,675 - +1.1
137,693 + +0.3
137,693 + +0.7
137,708 - +0.2
137,714 - +0.3
137,905 + IAI46_00580 0.63 -0.9
137,905 + IAI46_00580 0.63 -1.4
137,905 + IAI46_00580 0.63 -0.7
137,905 + IAI46_00580 0.63 +0.2
137,905 + IAI46_00580 0.63 -0.7
137,906 - IAI46_00580 0.63 -1.7
137,906 - IAI46_00580 0.63 -0.7
137,906 - IAI46_00580 0.63 -0.9
137,906 - IAI46_00580 0.63 +0.2
137,906 - IAI46_00580 0.63 -0.5
137,909 + IAI46_00580 0.64 +0.2
137,909 + IAI46_00580 0.64 -0.0
137,909 + IAI46_00580 0.64 +0.7
137,909 + IAI46_00580 0.64 -1.7
137,924 - IAI46_00580 0.69 +0.6
137,929 + IAI46_00580 0.70 +0.4
137,969 + IAI46_00580 0.83 +2.0
138,023 + +0.6
138,041 + +0.3
138,041 + +1.0
138,101 + +0.6
138,101 + +0.2
138,101 + +0.1
138,101 + +0.3
138,101 + +0.1
138,101 + -0.1
138,101 + -0.1
138,102 - +0.8
138,102 - +0.0
138,102 - -1.0
138,102 - -0.1
138,102 - -0.8
138,102 - +0.1
138,102 - +1.2
138,102 - -0.7
138,179 + -0.4
138,204 + -0.8
138,227 + -0.1
138,227 + +0.0
138,227 + +0.1
138,227 + +0.9
138,227 + +0.7
138,367 + -0.4
138,474 + +0.2
138,535 + -1.3
138,535 + -0.4
138,535 + -0.4
138,535 + -0.5
138,535 + -0.7
138,537 + +0.0

Or see this region's nucleotide sequence