Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00430 and IAI46_00435 are separated by 365 nucleotides IAI46_00435 and IAI46_00440 overlap by 1 nucleotides
IAI46_00430: IAI46_00430 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 96,964 to 98,658
_00430
IAI46_00435: IAI46_00435 - transcriptional regulator UhpA, at 99,024 to 99,614
_00435
IAI46_00440: IAI46_00440 - signal transduction histidine-protein kinase/phosphatase UhpB, at 99,614 to 101,149
_00440
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.152 kb on - strand, within IAI46_00430 at 98.152 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.171 kb on - strand, within IAI46_00430 at 98.171 kb on - strand, within IAI46_00430 at 98.194 kb on + strand, within IAI46_00430 at 98.194 kb on + strand, within IAI46_00430 at 98.195 kb on - strand, within IAI46_00430 at 98.217 kb on + strand, within IAI46_00430 at 98.218 kb on - strand, within IAI46_00430 at 98.242 kb on - strand, within IAI46_00430 at 98.242 kb on - strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.284 kb on - strand, within IAI46_00430 at 98.296 kb on - strand, within IAI46_00430 at 98.344 kb on + strand, within IAI46_00430 at 98.395 kb on - strand, within IAI46_00430 at 98.444 kb on + strand, within IAI46_00430 at 98.444 kb on + strand, within IAI46_00430 at 98.523 kb on + strand at 98.524 kb on - strand at 98.524 kb on - strand at 98.524 kb on - strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.575 kb on + strand at 98.622 kb on + strand at 98.623 kb on - strand at 98.623 kb on - strand at 98.623 kb on - strand at 98.654 kb on + strand at 98.654 kb on + strand at 98.654 kb on + strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.656 kb on + strand at 98.657 kb on - strand at 98.668 kb on + strand at 98.699 kb on + strand at 98.702 kb on + strand at 98.702 kb on + strand at 98.716 kb on + strand at 98.717 kb on - strand at 98.717 kb on - strand at 98.717 kb on - strand at 98.719 kb on + strand at 98.740 kb on + strand at 98.740 kb on + strand at 98.740 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.744 kb on + strand at 98.745 kb on - strand at 98.745 kb on - strand at 98.745 kb on - strand at 98.783 kb on - strand at 98.783 kb on - strand at 98.783 kb on - strand at 98.872 kb on - strand at 98.872 kb on - strand at 98.876 kb on + strand at 98.876 kb on + strand at 98.876 kb on + strand at 98.887 kb on + strand at 98.930 kb on - strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.961 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.980 kb on - strand at 98.980 kb on - strand at 98.980 kb on - strand at 98.981 kb on + strand at 98.982 kb on - strand at 98.986 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 99.044 kb on + strand at 99.188 kb on + strand, within IAI46_00435 at 99.188 kb on + strand, within IAI46_00435 at 99.243 kb on - strand, within IAI46_00435 at 99.469 kb on + strand, within IAI46_00435 at 99.470 kb on - strand, within IAI46_00435 at 99.572 kb on + strand at 99.573 kb on - strand at 99.654 kb on - strand at 99.892 kb on + strand, within IAI46_00440 at 100.092 kb on + strand, within IAI46_00440 at 100.093 kb on - strand, within IAI46_00440 at 100.101 kb on - strand, within IAI46_00440 at 100.148 kb on - strand, within IAI46_00440 at 100.180 kb on + strand, within IAI46_00440 at 100.180 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.184 kb on + strand, within IAI46_00440 at 100.185 kb on - strand, within IAI46_00440 at 100.185 kb on - strand, within IAI46_00440 at 100.185 kb on - strand, within IAI46_00440 at 100.185 kb on - strand, within IAI46_00440 at 100.185 kb on - strand, within IAI46_00440 at 100.207 kb on + strand, within IAI46_00440 at 100.207 kb on + strand, within IAI46_00440 at 100.344 kb on + strand, within IAI46_00440 at 100.345 kb on - strand, within IAI46_00440 at 100.473 kb on + strand, within IAI46_00440 at 100.612 kb on + strand, within IAI46_00440 at 100.612 kb on + strand, within IAI46_00440 at 100.613 kb on - strand, within IAI46_00440
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 98,151 + IAI46_00430 0.70 -0.8 98,151 + IAI46_00430 0.70 -1.1 98,151 + IAI46_00430 0.70 +0.2 98,151 + IAI46_00430 0.70 -0.4 98,152 - IAI46_00430 0.70 -0.7 98,152 - IAI46_00430 0.70 +0.6 98,165 - IAI46_00430 0.71 +0.2 98,165 - IAI46_00430 0.71 +0.1 98,165 - IAI46_00430 0.71 +1.5 98,171 - IAI46_00430 0.71 +0.8 98,171 - IAI46_00430 0.71 +0.4 98,194 + IAI46_00430 0.73 -0.2 98,194 + IAI46_00430 0.73 +0.3 98,195 - IAI46_00430 0.73 -0.2 98,217 + IAI46_00430 0.74 -0.0 98,218 - IAI46_00430 0.74 +0.3 98,242 - IAI46_00430 0.75 +1.1 98,242 - IAI46_00430 0.75 +0.5 98,281 + IAI46_00430 0.78 +0.2 98,281 + IAI46_00430 0.78 -0.2 98,281 + IAI46_00430 0.78 +0.1 98,282 - IAI46_00430 0.78 +0.1 98,282 - IAI46_00430 0.78 -0.2 98,282 - IAI46_00430 0.78 -1.0 98,284 - IAI46_00430 0.78 -0.0 98,296 - IAI46_00430 0.79 -0.2 98,344 + IAI46_00430 0.81 +0.7 98,395 - IAI46_00430 0.84 -0.2 98,444 + IAI46_00430 0.87 -0.3 98,444 + IAI46_00430 0.87 +0.2 98,523 + -0.0 98,524 - +0.8 98,524 - +0.7 98,524 - +0.1 98,540 + -1.1 98,540 + -0.4 98,541 - +1.3 98,541 - -0.3 98,575 + +0.4 98,622 + -1.8 98,623 - +1.0 98,623 - -0.5 98,623 - +0.5 98,654 + +1.2 98,654 + +0.4 98,654 + -0.4 98,655 - -0.2 98,655 - -0.9 98,655 - +0.0 98,655 - +0.6 98,655 - +0.0 98,655 - -0.2 98,656 + -0.3 98,657 - -0.0 98,668 + +0.3 98,699 + -0.1 98,702 + +0.5 98,702 + -0.3 98,716 + +0.8 98,717 - +0.1 98,717 - +0.1 98,717 - +0.2 98,719 + +1.3 98,740 + -0.4 98,740 + +0.9 98,740 + -1.0 98,742 + +0.1 98,742 + +0.0 98,742 + +0.4 98,742 + +2.2 98,742 + -0.5 98,742 + -1.2 98,743 - +0.8 98,743 - +0.8 98,743 - +1.5 98,743 - +0.6 98,743 - -0.2 98,744 + +0.9 98,745 - +0.2 98,745 - +0.4 98,745 - +0.0 98,783 - -0.0 98,783 - +0.2 98,783 - +0.7 98,872 - -0.2 98,872 - +0.5 98,876 + +0.5 98,876 + +0.1 98,876 + -0.0 98,887 + -0.6 98,930 - +0.4 98,934 + -0.3 98,934 + +0.6 98,934 + +0.2 98,934 + -0.5 98,935 - +0.1 98,935 - +0.9 98,935 - -0.2 98,935 - -0.4 98,935 - -0.1 98,961 + +0.0 98,979 + +0.3 98,979 + -0.0 98,979 + +0.3 98,979 + +1.0 98,979 + -0.1 98,979 + -0.8 98,980 - +0.2 98,980 - -0.2 98,980 - +0.9 98,981 + +0.3 98,982 - +0.5 98,986 + +0.0 98,988 + -0.7 98,988 + +0.4 98,988 + -0.8 98,988 + -0.1 98,988 + -1.3 98,988 + +0.2 98,988 + +0.4 98,988 + +0.1 98,988 + -0.6 98,988 + +0.6 98,989 - +0.5 98,989 - -0.6 98,989 - +0.6 98,989 - +0.1 98,989 - -0.7 98,989 - -0.1 98,989 - -0.2 98,989 - +0.1 98,989 - +0.4 99,044 + -0.2 99,188 + IAI46_00435 0.28 +0.0 99,188 + IAI46_00435 0.28 +0.6 99,243 - IAI46_00435 0.37 +1.7 99,469 + IAI46_00435 0.75 -0.3 99,470 - IAI46_00435 0.75 -0.2 99,572 + -0.5 99,573 - -0.9 99,654 - +1.3 99,892 + IAI46_00440 0.18 +0.1 100,092 + IAI46_00440 0.31 +0.6 100,093 - IAI46_00440 0.31 -0.7 100,101 - IAI46_00440 0.32 +0.5 100,148 - IAI46_00440 0.35 -0.8 100,180 + IAI46_00440 0.37 -1.0 100,180 + IAI46_00440 0.37 +0.6 100,184 + IAI46_00440 0.37 +0.7 100,184 + IAI46_00440 0.37 -0.3 100,184 + IAI46_00440 0.37 -0.5 100,184 + IAI46_00440 0.37 -0.5 100,184 + IAI46_00440 0.37 +0.9 100,184 + IAI46_00440 0.37 +0.7 100,184 + IAI46_00440 0.37 -0.2 100,184 + IAI46_00440 0.37 +0.6 100,185 - IAI46_00440 0.37 +0.6 100,185 - IAI46_00440 0.37 +0.7 100,185 - IAI46_00440 0.37 -0.4 100,185 - IAI46_00440 0.37 -0.9 100,185 - IAI46_00440 0.37 +0.6 100,207 + IAI46_00440 0.39 -1.2 100,207 + IAI46_00440 0.39 +0.5 100,344 + IAI46_00440 0.48 -0.0 100,345 - IAI46_00440 0.48 -0.1 100,473 + IAI46_00440 0.56 -0.1 100,612 + IAI46_00440 0.65 -0.0 100,612 + IAI46_00440 0.65 +0.6 100,613 - IAI46_00440 0.65 +0.1
Or see this region's nucleotide sequence