Strain Fitness in Serratia liquefaciens MT49 around IAI46_00425

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00415 and IAI46_00420 are separated by 112 nucleotidesIAI46_00420 and IAI46_00425 are separated by 157 nucleotidesIAI46_00425 and IAI46_00430 are separated by 223 nucleotides IAI46_00415: IAI46_00415 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 94,981 to 95,580 _00415 IAI46_00420: IAI46_00420 - MarR family transcriptional regulator, at 95,693 to 96,157 _00420 IAI46_00425: IAI46_00425 - organic hydroperoxide resistance protein, at 96,315 to 96,740 _00425 IAI46_00430: IAI46_00430 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 96,964 to 98,658 _00430 Position (kb) 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.563 kb on + strandat 95.564 kb on - strandat 95.564 kb on - strandat 95.581 kb on - strandat 95.626 kb on + strandat 95.627 kb on - strandat 95.627 kb on - strandat 95.636 kb on - strandat 95.640 kb on + strandat 95.769 kb on - strand, within IAI46_00420at 95.798 kb on + strand, within IAI46_00420at 95.798 kb on + strand, within IAI46_00420at 95.831 kb on + strand, within IAI46_00420at 95.832 kb on - strand, within IAI46_00420at 95.840 kb on + strand, within IAI46_00420at 95.860 kb on - strand, within IAI46_00420at 95.860 kb on - strand, within IAI46_00420at 96.103 kb on + strand, within IAI46_00420at 96.104 kb on - strand, within IAI46_00420at 96.107 kb on - strand, within IAI46_00420at 96.144 kb on + strandat 96.144 kb on + strandat 96.145 kb on - strandat 96.195 kb on + strandat 96.195 kb on + strandat 96.195 kb on + strandat 96.282 kb on + strandat 96.314 kb on + strandat 96.315 kb on - strandat 96.456 kb on - strand, within IAI46_00425at 96.691 kb on - strand, within IAI46_00425at 96.691 kb on - strand, within IAI46_00425at 96.713 kb on + strandat 96.713 kb on + strandat 96.714 kb on - strandat 96.714 kb on - strandat 96.714 kb on - strandat 96.714 kb on - strandat 96.721 kb on + strandat 96.721 kb on + strandat 96.734 kb on + strandat 96.734 kb on + strandat 96.735 kb on - strandat 96.735 kb on - strandat 96.735 kb on - strandat 96.775 kb on + strandat 96.775 kb on + strandat 96.775 kb on + strandat 96.775 kb on + strandat 96.776 kb on - strandat 96.776 kb on - strandat 96.776 kb on - strandat 96.776 kb on - strandat 96.778 kb on + strandat 96.778 kb on + strandat 96.779 kb on - strandat 96.779 kb on - strandat 96.779 kb on - strandat 96.809 kb on + strandat 96.809 kb on + strandat 96.810 kb on - strandat 96.810 kb on - strandat 96.862 kb on + strandat 96.862 kb on + strandat 96.863 kb on - strandat 96.865 kb on + strandat 96.866 kb on - strandat 96.883 kb on + strandat 96.883 kb on + strandat 96.884 kb on - strandat 96.961 kb on + strandat 96.962 kb on - strandat 96.962 kb on - strandat 96.975 kb on + strandat 96.976 kb on - strandat 96.998 kb on + strandat 96.999 kb on - strandat 97.004 kb on + strandat 97.019 kb on - strandat 97.052 kb on - strandat 97.052 kb on - strandat 97.092 kb on + strandat 97.092 kb on + strandat 97.093 kb on - strandat 97.093 kb on - strandat 97.137 kb on + strand, within IAI46_00430at 97.138 kb on - strand, within IAI46_00430at 97.184 kb on - strand, within IAI46_00430at 97.188 kb on + strand, within IAI46_00430at 97.202 kb on + strand, within IAI46_00430at 97.203 kb on - strand, within IAI46_00430at 97.203 kb on - strand, within IAI46_00430at 97.203 kb on - strand, within IAI46_00430at 97.231 kb on + strand, within IAI46_00430at 97.232 kb on - strand, within IAI46_00430at 97.232 kb on - strand, within IAI46_00430at 97.234 kb on + strand, within IAI46_00430at 97.234 kb on + strand, within IAI46_00430at 97.235 kb on - strand, within IAI46_00430at 97.235 kb on - strand, within IAI46_00430at 97.235 kb on - strand, within IAI46_00430at 97.235 kb on - strand, within IAI46_00430at 97.334 kb on + strand, within IAI46_00430at 97.335 kb on - strand, within IAI46_00430at 97.335 kb on - strand, within IAI46_00430at 97.335 kb on - strand, within IAI46_00430at 97.335 kb on - strand, within IAI46_00430at 97.491 kb on + strand, within IAI46_00430at 97.491 kb on + strand, within IAI46_00430at 97.491 kb on + strand, within IAI46_00430at 97.491 kb on + strand, within IAI46_00430at 97.492 kb on - strand, within IAI46_00430at 97.492 kb on - strand, within IAI46_00430at 97.549 kb on + strand, within IAI46_00430at 97.549 kb on + strand, within IAI46_00430at 97.549 kb on + strand, within IAI46_00430at 97.550 kb on - strand, within IAI46_00430at 97.550 kb on - strand, within IAI46_00430at 97.560 kb on - strand, within IAI46_00430at 97.560 kb on - strand, within IAI46_00430at 97.573 kb on + strand, within IAI46_00430at 97.573 kb on + strand, within IAI46_00430at 97.616 kb on - strand, within IAI46_00430at 97.616 kb on - strand, within IAI46_00430at 97.674 kb on + strand, within IAI46_00430at 97.674 kb on + strand, within IAI46_00430at 97.674 kb on + strand, within IAI46_00430at 97.675 kb on - strand, within IAI46_00430at 97.675 kb on - strand, within IAI46_00430at 97.675 kb on - strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.678 kb on + strand, within IAI46_00430at 97.679 kb on - strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.708 kb on + strand, within IAI46_00430at 97.709 kb on - strand, within IAI46_00430at 97.709 kb on - strand, within IAI46_00430at 97.709 kb on - strand, within IAI46_00430at 97.719 kb on + strand, within IAI46_00430at 97.719 kb on + strand, within IAI46_00430at 97.719 kb on + strand, within IAI46_00430at 97.720 kb on - strand, within IAI46_00430at 97.722 kb on + strand, within IAI46_00430

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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95,563 + +0.3
95,563 + -0.3
95,563 + -1.3
95,563 + +0.5
95,563 + +0.1
95,564 - +1.2
95,564 - +0.2
95,581 - -1.0
95,626 + -0.2
95,627 - -1.8
95,627 - +1.0
95,636 - +1.0
95,640 + +0.5
95,769 - IAI46_00420 0.16 -0.2
95,798 + IAI46_00420 0.23 +0.7
95,798 + IAI46_00420 0.23 -0.1
95,831 + IAI46_00420 0.30 +0.4
95,832 - IAI46_00420 0.30 -0.0
95,840 + IAI46_00420 0.32 -0.1
95,860 - IAI46_00420 0.36 +0.1
95,860 - IAI46_00420 0.36 -1.5
96,103 + IAI46_00420 0.88 -0.5
96,104 - IAI46_00420 0.88 +0.3
96,107 - IAI46_00420 0.89 +0.3
96,144 + -0.6
96,144 + -0.1
96,145 - +0.3
96,195 + +0.1
96,195 + +0.1
96,195 + -0.4
96,282 + +0.6
96,314 + -0.4
96,315 - +0.4
96,456 - IAI46_00425 0.33 -0.2
96,691 - IAI46_00425 0.88 +0.0
96,691 - IAI46_00425 0.88 +2.2
96,713 + +1.1
96,713 + -0.9
96,714 - -0.2
96,714 - +0.4
96,714 - -0.1
96,714 - -0.4
96,721 + +0.2
96,721 + +0.7
96,734 + +0.0
96,734 + +0.5
96,735 - -0.4
96,735 - -1.6
96,735 - -0.3
96,775 + -0.0
96,775 + +1.2
96,775 + +0.5
96,775 + +0.2
96,776 - +0.2
96,776 - -0.4
96,776 - -0.0
96,776 - -1.3
96,778 + +0.2
96,778 + +0.2
96,779 - +0.2
96,779 - +0.7
96,779 - -0.5
96,809 + +0.3
96,809 + -0.2
96,810 - -0.9
96,810 - -0.4
96,862 + +0.2
96,862 + -0.7
96,863 - -0.1
96,865 + -0.6
96,866 - -0.6
96,883 + +0.8
96,883 + -0.8
96,884 - +0.4
96,961 + -0.3
96,962 - -0.2
96,962 - +0.1
96,975 + -0.1
96,976 - +0.4
96,998 + +0.2
96,999 - +0.0
97,004 + +0.3
97,019 - +0.7
97,052 - -0.7
97,052 - +0.3
97,092 + -0.1
97,092 + -0.4
97,093 - +2.2
97,093 - -0.4
97,137 + IAI46_00430 0.10 +0.6
97,138 - IAI46_00430 0.10 +0.8
97,184 - IAI46_00430 0.13 -0.7
97,188 + IAI46_00430 0.13 +0.1
97,202 + IAI46_00430 0.14 +0.3
97,203 - IAI46_00430 0.14 -0.2
97,203 - IAI46_00430 0.14 -0.0
97,203 - IAI46_00430 0.14 -0.4
97,231 + IAI46_00430 0.16 +1.4
97,232 - IAI46_00430 0.16 -0.5
97,232 - IAI46_00430 0.16 -0.2
97,234 + IAI46_00430 0.16 +0.1
97,234 + IAI46_00430 0.16 +0.3
97,235 - IAI46_00430 0.16 +0.3
97,235 - IAI46_00430 0.16 -0.5
97,235 - IAI46_00430 0.16 +0.1
97,235 - IAI46_00430 0.16 -0.1
97,334 + IAI46_00430 0.22 +0.6
97,335 - IAI46_00430 0.22 -0.5
97,335 - IAI46_00430 0.22 +0.7
97,335 - IAI46_00430 0.22 +0.5
97,335 - IAI46_00430 0.22 -0.5
97,491 + IAI46_00430 0.31 +0.1
97,491 + IAI46_00430 0.31 +0.7
97,491 + IAI46_00430 0.31 +0.5
97,491 + IAI46_00430 0.31 +0.3
97,492 - IAI46_00430 0.31 -1.0
97,492 - IAI46_00430 0.31 +0.1
97,549 + IAI46_00430 0.35 +0.7
97,549 + IAI46_00430 0.35 -0.2
97,549 + IAI46_00430 0.35 -2.9
97,550 - IAI46_00430 0.35 +0.8
97,550 - IAI46_00430 0.35 +2.4
97,560 - IAI46_00430 0.35 -0.1
97,560 - IAI46_00430 0.35 +1.6
97,573 + IAI46_00430 0.36 +0.2
97,573 + IAI46_00430 0.36 +0.5
97,616 - IAI46_00430 0.38 +1.8
97,616 - IAI46_00430 0.38 +0.3
97,674 + IAI46_00430 0.42 +0.1
97,674 + IAI46_00430 0.42 +1.0
97,674 + IAI46_00430 0.42 -0.2
97,675 - IAI46_00430 0.42 -0.3
97,675 - IAI46_00430 0.42 +0.6
97,675 - IAI46_00430 0.42 -0.0
97,678 + IAI46_00430 0.42 +0.2
97,678 + IAI46_00430 0.42 +1.0
97,678 + IAI46_00430 0.42 +0.2
97,678 + IAI46_00430 0.42 +0.4
97,678 + IAI46_00430 0.42 +0.3
97,678 + IAI46_00430 0.42 +0.2
97,679 - IAI46_00430 0.42 +0.0
97,708 + IAI46_00430 0.44 +0.1
97,708 + IAI46_00430 0.44 +0.6
97,708 + IAI46_00430 0.44 +0.0
97,708 + IAI46_00430 0.44 +0.8
97,708 + IAI46_00430 0.44 -0.2
97,708 + IAI46_00430 0.44 +0.4
97,709 - IAI46_00430 0.44 +0.0
97,709 - IAI46_00430 0.44 -0.5
97,709 - IAI46_00430 0.44 +0.9
97,719 + IAI46_00430 0.45 +0.4
97,719 + IAI46_00430 0.45 -1.5
97,719 + IAI46_00430 0.45 +0.3
97,720 - IAI46_00430 0.45 -0.2
97,722 + IAI46_00430 0.45 +0.7

Or see this region's nucleotide sequence