Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22055

Experiment: D-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS22050 and ABIE41_RS22055 are separated by 116 nucleotidesABIE41_RS22055 and ABIE41_RS22060 are separated by 92 nucleotides ABIE41_RS22050: ABIE41_RS22050 - L,D-transpeptidase, at 4,535,178 to 4,535,951 _RS22050 ABIE41_RS22055: ABIE41_RS22055 - DUF2076 domain-containing protein, at 4,536,068 to 4,536,853 _RS22055 ABIE41_RS22060: ABIE41_RS22060 - L,D-transpeptidase, at 4,536,946 to 4,537,770 _RS22060 Position (kb) 4536 4537Strain fitness (log2 ratio) -2 -1 0 1at 4535.158 kb on + strandat 4535.159 kb on - strandat 4535.355 kb on + strand, within ABIE41_RS22050at 4535.355 kb on + strand, within ABIE41_RS22050at 4535.355 kb on + strand, within ABIE41_RS22050at 4535.355 kb on + strand, within ABIE41_RS22050at 4535.356 kb on - strand, within ABIE41_RS22050at 4535.356 kb on - strand, within ABIE41_RS22050at 4535.379 kb on + strand, within ABIE41_RS22050at 4535.443 kb on - strand, within ABIE41_RS22050at 4535.500 kb on - strand, within ABIE41_RS22050at 4535.716 kb on - strand, within ABIE41_RS22050at 4535.721 kb on + strand, within ABIE41_RS22050at 4535.722 kb on - strand, within ABIE41_RS22050at 4535.994 kb on + strandat 4535.996 kb on - strandat 4536.158 kb on + strand, within ABIE41_RS22055at 4536.158 kb on + strand, within ABIE41_RS22055at 4536.159 kb on - strand, within ABIE41_RS22055at 4536.159 kb on - strand, within ABIE41_RS22055at 4536.159 kb on - strand, within ABIE41_RS22055at 4536.188 kb on + strand, within ABIE41_RS22055at 4536.198 kb on - strand, within ABIE41_RS22055at 4536.218 kb on + strand, within ABIE41_RS22055at 4536.218 kb on + strand, within ABIE41_RS22055at 4536.218 kb on + strand, within ABIE41_RS22055at 4536.218 kb on + strand, within ABIE41_RS22055at 4536.219 kb on - strand, within ABIE41_RS22055at 4536.219 kb on - strand, within ABIE41_RS22055at 4536.219 kb on - strand, within ABIE41_RS22055at 4536.731 kb on + strand, within ABIE41_RS22055at 4536.732 kb on - strand, within ABIE41_RS22055at 4536.732 kb on - strand, within ABIE41_RS22055at 4536.762 kb on - strand, within ABIE41_RS22055at 4536.762 kb on - strand, within ABIE41_RS22055at 4536.986 kb on + strandat 4536.986 kb on + strandat 4536.986 kb on + strandat 4536.987 kb on - strandat 4536.987 kb on - strandat 4536.987 kb on - strandat 4537.050 kb on + strand, within ABIE41_RS22060at 4537.050 kb on + strand, within ABIE41_RS22060at 4537.050 kb on + strand, within ABIE41_RS22060at 4537.051 kb on - strand, within ABIE41_RS22060at 4537.051 kb on - strand, within ABIE41_RS22060at 4537.051 kb on - strand, within ABIE41_RS22060at 4537.051 kb on - strand, within ABIE41_RS22060at 4537.079 kb on + strand, within ABIE41_RS22060at 4537.080 kb on - strand, within ABIE41_RS22060at 4537.098 kb on - strand, within ABIE41_RS22060at 4537.269 kb on - strand, within ABIE41_RS22060at 4537.358 kb on + strand, within ABIE41_RS22060at 4537.358 kb on + strand, within ABIE41_RS22060at 4537.461 kb on - strand, within ABIE41_RS22060at 4537.511 kb on + strand, within ABIE41_RS22060at 4537.565 kb on + strand, within ABIE41_RS22060at 4537.565 kb on + strand, within ABIE41_RS22060at 4537.634 kb on + strand, within ABIE41_RS22060at 4537.634 kb on + strand, within ABIE41_RS22060at 4537.635 kb on - strand, within ABIE41_RS22060at 4537.691 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
remove
4,535,158 + +1.1
4,535,159 - -0.9
4,535,355 + ABIE41_RS22050 0.23 +0.2
4,535,355 + ABIE41_RS22050 0.23 -0.4
4,535,355 + ABIE41_RS22050 0.23 +1.3
4,535,355 + ABIE41_RS22050 0.23 +1.2
4,535,356 - ABIE41_RS22050 0.23 +0.2
4,535,356 - ABIE41_RS22050 0.23 +0.5
4,535,379 + ABIE41_RS22050 0.26 +0.2
4,535,443 - ABIE41_RS22050 0.34 +0.0
4,535,500 - ABIE41_RS22050 0.42 +1.2
4,535,716 - ABIE41_RS22050 0.70 +0.6
4,535,721 + ABIE41_RS22050 0.70 +0.1
4,535,722 - ABIE41_RS22050 0.70 -0.3
4,535,994 + -2.2
4,535,996 - +0.1
4,536,158 + ABIE41_RS22055 0.11 -0.1
4,536,158 + ABIE41_RS22055 0.11 -0.1
4,536,159 - ABIE41_RS22055 0.12 +0.5
4,536,159 - ABIE41_RS22055 0.12 -0.1
4,536,159 - ABIE41_RS22055 0.12 -0.6
4,536,188 + ABIE41_RS22055 0.15 +0.3
4,536,198 - ABIE41_RS22055 0.17 +0.1
4,536,218 + ABIE41_RS22055 0.19 +0.0
4,536,218 + ABIE41_RS22055 0.19 -1.2
4,536,218 + ABIE41_RS22055 0.19 +0.3
4,536,218 + ABIE41_RS22055 0.19 +0.4
4,536,219 - ABIE41_RS22055 0.19 +0.6
4,536,219 - ABIE41_RS22055 0.19 -1.6
4,536,219 - ABIE41_RS22055 0.19 +0.5
4,536,731 + ABIE41_RS22055 0.84 +0.6
4,536,732 - ABIE41_RS22055 0.84 +0.1
4,536,732 - ABIE41_RS22055 0.84 +0.7
4,536,762 - ABIE41_RS22055 0.88 +0.7
4,536,762 - ABIE41_RS22055 0.88 -0.2
4,536,986 + +0.9
4,536,986 + +0.5
4,536,986 + +0.3
4,536,987 - -2.4
4,536,987 - -0.6
4,536,987 - +0.4
4,537,050 + ABIE41_RS22060 0.13 -0.4
4,537,050 + ABIE41_RS22060 0.13 +0.5
4,537,050 + ABIE41_RS22060 0.13 -0.2
4,537,051 - ABIE41_RS22060 0.13 -0.6
4,537,051 - ABIE41_RS22060 0.13 -1.3
4,537,051 - ABIE41_RS22060 0.13 -0.2
4,537,051 - ABIE41_RS22060 0.13 +0.2
4,537,079 + ABIE41_RS22060 0.16 -1.8
4,537,080 - ABIE41_RS22060 0.16 -0.4
4,537,098 - ABIE41_RS22060 0.18 -0.1
4,537,269 - ABIE41_RS22060 0.39 -0.3
4,537,358 + ABIE41_RS22060 0.50 +0.8
4,537,358 + ABIE41_RS22060 0.50 -0.1
4,537,461 - ABIE41_RS22060 0.62 +0.4
4,537,511 + ABIE41_RS22060 0.68 -0.7
4,537,565 + ABIE41_RS22060 0.75 +0.3
4,537,565 + ABIE41_RS22060 0.75 -1.8
4,537,634 + ABIE41_RS22060 0.83 -1.0
4,537,634 + ABIE41_RS22060 0.83 -0.5
4,537,635 - ABIE41_RS22060 0.84 -1.0
4,537,691 + -0.1

Or see this region's nucleotide sequence