Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13585 and ABIE41_RS13590 are separated by 75 nucleotides ABIE41_RS13590 and ABIE41_RS13595 are separated by 146 nucleotides ABIE41_RS13595 and ABIE41_RS13600 are separated by 6 nucleotides ABIE41_RS13600 and ABIE41_RS13605 are separated by 7 nucleotides
ABIE41_RS13585: ABIE41_RS13585 - glutathione S-transferase family protein, at 2,790,914 to 2,791,591
_RS13585
ABIE41_RS13590: ABIE41_RS13590 - ribulose-phosphate 3-epimerase, at 2,791,667 to 2,792,351
_RS13590
ABIE41_RS13595: ABIE41_RS13595 - adenylosuccinate lyase, at 2,792,498 to 2,793,805
_RS13595
ABIE41_RS13600: ABIE41_RS13600 - metallophosphoesterase family protein, at 2,793,812 to 2,794,558
_RS13600
ABIE41_RS13605: ABIE41_RS13605 - alpha/beta hydrolase, at 2,794,566 to 2,795,144
_RS13605
Position (kb)
2792
2793
2794 Strain fitness (log2 ratio)
-1
0
1 at 2791.654 kb on + strand at 2791.654 kb on + strand at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.350 kb on - strand, within ABIE41_RS13600 at 2794.444 kb on + strand, within ABIE41_RS13600
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 2,791,654 + -0.6 2,791,654 + +0.5 2,794,169 + ABIE41_RS13600 0.48 +0.2 2,794,169 + ABIE41_RS13600 0.48 +0.3 2,794,169 + ABIE41_RS13600 0.48 +0.9 2,794,170 - ABIE41_RS13600 0.48 -0.7 2,794,170 - ABIE41_RS13600 0.48 -0.7 2,794,170 - ABIE41_RS13600 0.48 +0.4 2,794,350 - ABIE41_RS13600 0.72 -0.4 2,794,444 + ABIE41_RS13600 0.85 +0.3
Or see this region's nucleotide sequence