Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13595

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13585 and ABIE41_RS13590 are separated by 75 nucleotidesABIE41_RS13590 and ABIE41_RS13595 are separated by 146 nucleotidesABIE41_RS13595 and ABIE41_RS13600 are separated by 6 nucleotidesABIE41_RS13600 and ABIE41_RS13605 are separated by 7 nucleotides ABIE41_RS13585: ABIE41_RS13585 - glutathione S-transferase family protein, at 2,790,914 to 2,791,591 _RS13585 ABIE41_RS13590: ABIE41_RS13590 - ribulose-phosphate 3-epimerase, at 2,791,667 to 2,792,351 _RS13590 ABIE41_RS13595: ABIE41_RS13595 - adenylosuccinate lyase, at 2,792,498 to 2,793,805 _RS13595 ABIE41_RS13600: ABIE41_RS13600 - metallophosphoesterase family protein, at 2,793,812 to 2,794,558 _RS13600 ABIE41_RS13605: ABIE41_RS13605 - alpha/beta hydrolase, at 2,794,566 to 2,795,144 _RS13605 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -1 0 1at 2791.654 kb on + strandat 2791.654 kb on + strandat 2794.169 kb on + strand, within ABIE41_RS13600at 2794.169 kb on + strand, within ABIE41_RS13600at 2794.169 kb on + strand, within ABIE41_RS13600at 2794.170 kb on - strand, within ABIE41_RS13600at 2794.170 kb on - strand, within ABIE41_RS13600at 2794.170 kb on - strand, within ABIE41_RS13600at 2794.350 kb on - strand, within ABIE41_RS13600at 2794.444 kb on + strand, within ABIE41_RS13600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,791,654 + -0.6
2,791,654 + +0.5
2,794,169 + ABIE41_RS13600 0.48 +0.2
2,794,169 + ABIE41_RS13600 0.48 +0.3
2,794,169 + ABIE41_RS13600 0.48 +0.9
2,794,170 - ABIE41_RS13600 0.48 -0.7
2,794,170 - ABIE41_RS13600 0.48 -0.7
2,794,170 - ABIE41_RS13600 0.48 +0.4
2,794,350 - ABIE41_RS13600 0.72 -0.4
2,794,444 + ABIE41_RS13600 0.85 +0.3

Or see this region's nucleotide sequence