Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07665

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07660 and ABIE41_RS07665 overlap by 1 nucleotidesABIE41_RS07665 and ABIE41_RS07670 are separated by 274 nucleotides ABIE41_RS07660: ABIE41_RS07660 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 1,566,348 to 1,567,487 _RS07660 ABIE41_RS07665: ABIE41_RS07665 - phosphonate C-P lyase system protein PhnL, at 1,567,487 to 1,568,185 _RS07665 ABIE41_RS07670: ABIE41_RS07670 - phosphonate C-P lyase system protein PhnK, at 1,568,460 to 1,569,266 _RS07670 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -2 -1 0 1 2at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.574 kb on + strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.575 kb on - strand, within ABIE41_RS07660at 1566.934 kb on + strand, within ABIE41_RS07660at 1566.934 kb on + strand, within ABIE41_RS07660at 1566.935 kb on - strand, within ABIE41_RS07660at 1567.201 kb on + strand, within ABIE41_RS07660at 1567.201 kb on + strand, within ABIE41_RS07660at 1567.202 kb on - strand, within ABIE41_RS07660at 1567.202 kb on - strand, within ABIE41_RS07660at 1567.345 kb on + strand, within ABIE41_RS07660at 1567.345 kb on + strand, within ABIE41_RS07660at 1567.345 kb on + strand, within ABIE41_RS07660at 1567.346 kb on - strand, within ABIE41_RS07660at 1567.346 kb on - strand, within ABIE41_RS07660at 1567.522 kb on - strandat 1567.585 kb on + strand, within ABIE41_RS07665at 1567.585 kb on + strand, within ABIE41_RS07665at 1567.585 kb on + strand, within ABIE41_RS07665at 1567.586 kb on - strand, within ABIE41_RS07665at 1567.586 kb on - strand, within ABIE41_RS07665at 1567.984 kb on + strand, within ABIE41_RS07665at 1567.984 kb on + strand, within ABIE41_RS07665at 1567.985 kb on - strand, within ABIE41_RS07665at 1568.004 kb on + strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.005 kb on - strand, within ABIE41_RS07665at 1568.463 kb on + strandat 1568.463 kb on + strandat 1568.463 kb on + strandat 1568.464 kb on - strandat 1568.464 kb on - strandat 1568.496 kb on - strandat 1568.496 kb on - strandat 1568.497 kb on + strandat 1568.667 kb on + strand, within ABIE41_RS07670at 1568.866 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.010 kb on + strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670at 1569.011 kb on - strand, within ABIE41_RS07670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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1,566,574 + ABIE41_RS07660 0.20 -2.2
1,566,574 + ABIE41_RS07660 0.20 +0.4
1,566,574 + ABIE41_RS07660 0.20 -0.2
1,566,574 + ABIE41_RS07660 0.20 +0.6
1,566,574 + ABIE41_RS07660 0.20 -0.6
1,566,574 + ABIE41_RS07660 0.20 +0.2
1,566,574 + ABIE41_RS07660 0.20 -0.8
1,566,574 + ABIE41_RS07660 0.20 -2.0
1,566,575 - ABIE41_RS07660 0.20 -2.7
1,566,575 - ABIE41_RS07660 0.20 -2.1
1,566,575 - ABIE41_RS07660 0.20 -1.0
1,566,575 - ABIE41_RS07660 0.20 +0.1
1,566,575 - ABIE41_RS07660 0.20 -2.1
1,566,575 - ABIE41_RS07660 0.20 -0.1
1,566,575 - ABIE41_RS07660 0.20 +0.2
1,566,575 - ABIE41_RS07660 0.20 +0.2
1,566,575 - ABIE41_RS07660 0.20 -1.1
1,566,934 + ABIE41_RS07660 0.51 +0.4
1,566,934 + ABIE41_RS07660 0.51 -0.8
1,566,935 - ABIE41_RS07660 0.51 +0.1
1,567,201 + ABIE41_RS07660 0.75 +2.2
1,567,201 + ABIE41_RS07660 0.75 -1.3
1,567,202 - ABIE41_RS07660 0.75 -0.5
1,567,202 - ABIE41_RS07660 0.75 -0.1
1,567,345 + ABIE41_RS07660 0.87 -1.1
1,567,345 + ABIE41_RS07660 0.87 +2.0
1,567,345 + ABIE41_RS07660 0.87 +1.5
1,567,346 - ABIE41_RS07660 0.88 +1.2
1,567,346 - ABIE41_RS07660 0.88 -0.4
1,567,522 - +0.1
1,567,585 + ABIE41_RS07665 0.14 +1.2
1,567,585 + ABIE41_RS07665 0.14 -0.4
1,567,585 + ABIE41_RS07665 0.14 +0.4
1,567,586 - ABIE41_RS07665 0.14 -0.1
1,567,586 - ABIE41_RS07665 0.14 -0.0
1,567,984 + ABIE41_RS07665 0.71 +0.3
1,567,984 + ABIE41_RS07665 0.71 +0.4
1,567,985 - ABIE41_RS07665 0.71 -0.5
1,568,004 + ABIE41_RS07665 0.74 +0.2
1,568,005 - ABIE41_RS07665 0.74 -0.8
1,568,005 - ABIE41_RS07665 0.74 +1.3
1,568,005 - ABIE41_RS07665 0.74 +0.2
1,568,005 - ABIE41_RS07665 0.74 +0.5
1,568,005 - ABIE41_RS07665 0.74 +1.5
1,568,005 - ABIE41_RS07665 0.74 +0.3
1,568,463 + +0.2
1,568,463 + -0.0
1,568,463 + -0.2
1,568,464 - -2.5
1,568,464 - -0.4
1,568,496 - -0.7
1,568,496 - +0.6
1,568,497 + +0.0
1,568,667 + ABIE41_RS07670 0.26 +0.2
1,568,866 + ABIE41_RS07670 0.50 +0.5
1,569,010 + ABIE41_RS07670 0.68 +1.7
1,569,010 + ABIE41_RS07670 0.68 +0.5
1,569,010 + ABIE41_RS07670 0.68 -0.9
1,569,010 + ABIE41_RS07670 0.68 +0.6
1,569,010 + ABIE41_RS07670 0.68 -0.7
1,569,010 + ABIE41_RS07670 0.68 -0.1
1,569,010 + ABIE41_RS07670 0.68 +0.3
1,569,010 + ABIE41_RS07670 0.68 +0.6
1,569,010 + ABIE41_RS07670 0.68 +1.2
1,569,011 - ABIE41_RS07670 0.68 +0.1
1,569,011 - ABIE41_RS07670 0.68 -0.4
1,569,011 - ABIE41_RS07670 0.68 +0.6
1,569,011 - ABIE41_RS07670 0.68 +0.2
1,569,011 - ABIE41_RS07670 0.68 +0.8
1,569,011 - ABIE41_RS07670 0.68 +0.8

Or see this region's nucleotide sequence