Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28430 and ABID97_RS28435 are separated by 4 nucleotides ABID97_RS28435 and ABID97_RS28440 are separated by 187 nucleotides ABID97_RS28440 and ABID97_RS28445 are separated by 26 nucleotides ABID97_RS28445 and ABID97_RS28450 are separated by 55 nucleotides
ABID97_RS28430: ABID97_RS28430 - thiolase family protein, at 605,788 to 606,924
_RS28430
ABID97_RS28435: ABID97_RS28435 - OB-fold domain-containing protein, at 606,929 to 607,285
_RS28435
ABID97_RS28440: ABID97_RS28440 - PrpF domain-containing protein, at 607,473 to 608,618
_RS28440
ABID97_RS28445: ABID97_RS28445 - SDR family oxidoreductase, at 608,645 to 609,424
_RS28445
ABID97_RS28450: ABID97_RS28450 - helix-turn-helix transcriptional regulator, at 609,480 to 610,274
_RS28450
Position (kb) 607
608
609 Strain fitness (log2 ratio) -1
0
1 at 607.120 kb on - strand, within ABID97_RS28435 at 607.405 kb on + strand at 607.406 kb on - strand at 607.463 kb on + strand at 607.487 kb on - strand at 608.164 kb on - strand, within ABID97_RS28440 at 608.587 kb on - strand at 608.657 kb on - strand at 608.759 kb on + strand, within ABID97_RS28445 at 608.760 kb on - strand, within ABID97_RS28445 at 608.886 kb on - strand, within ABID97_RS28445 at 608.999 kb on - strand, within ABID97_RS28445 at 609.082 kb on + strand, within ABID97_RS28445 at 609.552 kb on - strand at 609.574 kb on + strand, within ABID97_RS28450 at 609.574 kb on + strand, within ABID97_RS28450 at 609.586 kb on + strand, within ABID97_RS28450
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 607,120 - ABID97_RS28435 0.54 +0.0 607,405 + +0.7 607,406 - -0.3 607,463 + -0.9 607,487 - -0.2 608,164 - ABID97_RS28440 0.60 -1.4 608,587 - -0.4 608,657 - +0.0 608,759 + ABID97_RS28445 0.15 -1.1 608,760 - ABID97_RS28445 0.15 -0.4 608,886 - ABID97_RS28445 0.31 +0.8 608,999 - ABID97_RS28445 0.45 -0.2 609,082 + ABID97_RS28445 0.56 +0.3 609,552 - +0.5 609,574 + ABID97_RS28450 0.12 -0.4 609,574 + ABID97_RS28450 0.12 -0.7 609,586 + ABID97_RS28450 0.13 +0.6
Or see this region's nucleotide sequence