Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27085

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27075 and ABID97_RS27080 are separated by 41 nucleotidesABID97_RS27080 and ABID97_RS27085 are separated by 10 nucleotidesABID97_RS27085 and ABID97_RS27090 overlap by 4 nucleotidesABID97_RS27090 and ABID97_RS27095 are separated by 120 nucleotides ABID97_RS27075: ABID97_RS27075 - helix-turn-helix domain-containing protein, at 333,564 to 334,784 _RS27075 ABID97_RS27080: ABID97_RS27080 - DUF6616 family protein, at 334,826 to 335,161 _RS27080 ABID97_RS27085: ABID97_RS27085 - DNA alkylation repair protein, at 335,172 to 335,948 _RS27085 ABID97_RS27090: ABID97_RS27090 - MarR family transcriptional regulator, at 335,945 to 336,466 _RS27090 ABID97_RS27095: ABID97_RS27095 - nitric oxide reductase transcriptional regulator NorR, at 336,587 to 338,173 _RS27095 Position (kb) 335 336Strain fitness (log2 ratio) -1 0 1at 334.886 kb on - strand, within ABID97_RS27080at 334.897 kb on - strand, within ABID97_RS27080at 335.207 kb on + strandat 335.605 kb on - strand, within ABID97_RS27085at 336.514 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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334,886 - ABID97_RS27080 0.18 -0.3
334,897 - ABID97_RS27080 0.21 -0.1
335,207 + +0.0
335,605 - ABID97_RS27085 0.56 -1.7
336,514 + -0.1

Or see this region's nucleotide sequence