Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26510

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26505 and ABID97_RS26510 are separated by 188 nucleotidesABID97_RS26510 and ABID97_RS26515 are separated by 203 nucleotides ABID97_RS26505: ABID97_RS26505 - DUF899 domain-containing protein, at 219,178 to 219,960 _RS26505 ABID97_RS26510: ABID97_RS26510 - NUDIX hydrolase, at 220,149 to 220,598 _RS26510 ABID97_RS26515: ABID97_RS26515 - MFS transporter, at 220,802 to 222,061 _RS26515 Position (kb) 220 221Strain fitness (log2 ratio) -2 -1 0 1at 219.179 kb on + strandat 219.180 kb on - strandat 219.260 kb on + strand, within ABID97_RS26505at 219.261 kb on - strand, within ABID97_RS26505at 219.288 kb on - strand, within ABID97_RS26505at 219.362 kb on + strand, within ABID97_RS26505at 219.363 kb on - strand, within ABID97_RS26505at 219.411 kb on - strand, within ABID97_RS26505at 219.411 kb on - strand, within ABID97_RS26505at 219.419 kb on + strand, within ABID97_RS26505at 219.699 kb on - strand, within ABID97_RS26505at 219.770 kb on + strand, within ABID97_RS26505at 220.148 kb on + strandat 220.148 kb on + strandat 220.149 kb on - strandat 220.149 kb on - strandat 220.165 kb on - strandat 220.357 kb on - strand, within ABID97_RS26510at 220.946 kb on + strand, within ABID97_RS26515at 220.946 kb on + strand, within ABID97_RS26515at 220.947 kb on - strand, within ABID97_RS26515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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219,179 + -0.5
219,180 - -1.9
219,260 + ABID97_RS26505 0.10 -0.5
219,261 - ABID97_RS26505 0.11 +0.1
219,288 - ABID97_RS26505 0.14 -1.0
219,362 + ABID97_RS26505 0.23 +0.1
219,363 - ABID97_RS26505 0.24 -0.4
219,411 - ABID97_RS26505 0.30 -0.8
219,411 - ABID97_RS26505 0.30 +0.2
219,419 + ABID97_RS26505 0.31 +0.9
219,699 - ABID97_RS26505 0.67 -0.2
219,770 + ABID97_RS26505 0.76 -0.2
220,148 + +0.5
220,148 + -1.4
220,149 - -0.1
220,149 - +0.1
220,165 - -0.3
220,357 - ABID97_RS26510 0.46 -1.2
220,946 + ABID97_RS26515 0.11 -0.3
220,946 + ABID97_RS26515 0.11 -0.4
220,947 - ABID97_RS26515 0.12 +0.3

Or see this region's nucleotide sequence