Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26140 and ABID97_RS26145 are separated by 110 nucleotides ABID97_RS26145 and ABID97_RS26150 are separated by 16 nucleotides ABID97_RS26150 and ABID97_RS26155 are separated by 99 nucleotides
ABID97_RS26140: ABID97_RS26140 - acetamidase/formamidase family protein, at 153,365 to 155,773
_RS26140
ABID97_RS26145: ABID97_RS26145 - RidA family protein, at 155,884 to 156,282
_RS26145
ABID97_RS26150: ABID97_RS26150 - TetR/AcrR family transcriptional regulator, at 156,299 to 156,952
_RS26150
ABID97_RS26155: ABID97_RS26155 - NADH:flavin oxidoreductase/NADH oxidase, at 157,052 to 158,221
_RS26155
Position (kb) 156
157 Strain fitness (log2 ratio) -1
0
1 at 156.122 kb on - strand, within ABID97_RS26145 at 156.122 kb on - strand, within ABID97_RS26145 at 156.166 kb on + strand, within ABID97_RS26145 at 156.167 kb on - strand, within ABID97_RS26145 at 156.667 kb on - strand, within ABID97_RS26150 at 156.711 kb on + strand, within ABID97_RS26150 at 156.712 kb on - strand, within ABID97_RS26150 at 156.932 kb on + strand at 157.130 kb on + strand at 157.131 kb on - strand at 157.161 kb on - strand at 157.326 kb on - strand, within ABID97_RS26155 at 157.893 kb on - strand, within ABID97_RS26155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 156,122 - ABID97_RS26145 0.60 +0.2 156,122 - ABID97_RS26145 0.60 -1.0 156,166 + ABID97_RS26145 0.71 +1.0 156,167 - ABID97_RS26145 0.71 +0.4 156,667 - ABID97_RS26150 0.56 -1.5 156,711 + ABID97_RS26150 0.63 -1.4 156,712 - ABID97_RS26150 0.63 -0.9 156,932 + -0.7 157,130 + -1.3 157,131 - +1.1 157,161 - -0.5 157,326 - ABID97_RS26155 0.23 -0.5 157,893 - ABID97_RS26155 0.72 +0.0
Or see this region's nucleotide sequence